Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0255 ATGGTGGATTACGTCAGCAGCGACGATGATTATCGATACTCCGACGATCAAGATTACTCCGGCGACGCTTACGAAAGCGAAGAAATCGATTATAAGTTGGTTACTGCAAAGGCTTCCTCTACTATGTTGATTACTAAAGAGACGCTGCTAGCTGCACAGATGGAGGATTTGCGAAGTGTGATGGACATGCTATCAGTTACAGAGCAACATGCACGGATCCTGCTTATTTATCATCGTTGGGATGCTGAGAAGTTGTTTGCAGTGTATGCGGACAATGGGGTTGCACGTCTCTTTGCGGAAGCTGGTGTGGCTTTGGATAAAGATCATCACTCTAACTCACCAGTTCACCGTTTAATAATGTGTGAAATCTGCATAGAGGATGTTCCTTGTGATGAAGCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACACATGTTGGACGGAGCATTTTGTTGTCAAGATAAACGAGGGCCAAAGTAAACGCATTAGATGTATGGCGCACAAATGCAATTCCATTTGTGATGAAGCAGTTGTAAGAACTCTACTTAGTAGAAAGCACCCTGATATGGCCGAGAAATATGAACGCTTTCTTCTTGAATCTTACATCGAAGACAACAAGAGAGTTAAATGGTGTCCTAGCATACCTCACTGTGGGAATGCAATACGTGTTGAGGGTGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCTTGTCAGAAGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGGCTAAGAAGTGTCAAGATGAATCAGAAACTGTTAACTGGATAACATGTCATACAAAACCTTGTCCAAAATGCCACAAGCCAGTGGAGAAGAATGGTGGATGTAACTTGGTTAGCTGTATCTGTGGCCAATCATTTTGTTGGGTGTGTGGTGGAGCCACTGGCCGAGATCATACATGGTCAAGTATATCTGGTCATAGCTGTGGTCGTTACAAAGAGCAAGAAGAATCGGCTGCACGGGCAAAGCAGCATCTACATCGTTATATGCACTATCATGACCGCTATAAAGCTCACGCAGACTCCTTTAAGCTTGAAAGTAAACTTAAAGAGACCATACAAAGGAGGATTGATATTTCAGAAGAAAAAGATTCCAAACTCAGAGATTATAGCTGGGTAATTAATGGTCTCTCCAAACTTTTCAGATCTAGGCGTATCCTGTCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGACGAAATATCAGAAGCTAAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAGAAGATCTCTAAAATTTTGGCGGAGCCTTTTGATAACTTTACTGATGATAAGGTTCTGGAGATAAGAATGCAGATAATCAATCTGTCGACAGTTATTGACAAACTTTGTCAAAAAATGTATGATTGCATCCAGAATGATTTATTGGGTTCTCTCGAGAAATGTCACAACATAGCTCTATACAAGTCAAATGGCATAGAGAGGGCATCAGAAGTTTTGGCTTTGAGCGATAAAGACTAA 1584 0.4085 MVDYVSSDDDYRYSDDQDYSGDAYESEEIDYKLVTAKASSTMLITKETLLAAQMEDLRSVMDMLSVTEQHARILLIYHRWDAEKLFAVYADNGVARLFAEAGVALDKDHHSNSPVHRLIMCEICIEDVPCDEATRMDCGHCFCNTCWTEHFVVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSIPHCGNAIRVEGDELCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCQDESETVNWITCHTKPCPKCHKPVEKNGGCNLVSCICGQSFCWVCGGATGRDHTWSSISGHSCGRYKEQEESAARAKQHLHRYMHYHDRYKAHADSFKLESKLKETIQRRIDISEEKDSKLRDYSWVINGLSKLFRSRRILSYSYAFAFYMFGDELFKDEISEAKREIKQNLFEDQQQQLEANVEKISKILAEPFDNFTDDKVLEIRMQIINLSTVIDKLCQKMYDCIQNDLLGSLEKCHNIALYKSNGIERASEVLALSDKD* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0255 527 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Lan13g0255 527 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 503 IPR031127 GO:0004842|GO:0016567
Lan13g0255 527 SUPERFAMILY RING/U-box 118 204 - -
Lan13g0255 527 SUPERFAMILY RING/U-box 262 319 - -
Lan13g0255 527 SMART ibrneu5 262 327 IPR002867 -
Lan13g0255 527 SMART ibrneu5 192 254 IPR002867 -
Lan13g0255 527 SUPERFAMILY RING/U-box 192 260 - -
Lan13g0255 527 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 -
Lan13g0255 527 Gene3D - 250 497 - -
Lan13g0255 527 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Lan13g0255 527 Pfam Ariadne domain 332 523 IPR045840 -
Lan13g0255 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 205 IPR013083 -
Lan13g0255 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED 5 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0255 Lan-Chr13 1614017 1617335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0255 61 522 ARIADNE family AT2G16090 70.021 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0255 K11968 - gmx:100783343 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0255 13 1614017 1617335 Lan13g0255 13 1614017 1617335 ECH
Lan7g0168 7 1029534 1035311 Lan13g0255 13 1614017 1617335 LSH
Lan8g1781 8 24424990 24429279 Lan13g0255 13 1614017 1617335 LSH