Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0236 ATGGCTTCCGGTGACGTTGAGTACCGTTGTTTCGTTGGTGGCCTAGCATGGACCACCGATAGCGAAGCACTGGAGAAGGCTTTCTCTGCCTATGGTGAAATCGTTGATTCGAAGGTTATAAACGATCGTGAAACTGGAAGGTCAAGAGGTTTCGGATTCGTTACTTTTGCAAATGAGCAATCTATGAGGGACGCGATCGAGGCTTTGAACGGCCAGGATCTTGATGGCCGTAATATAACCGTTAACGAGGCTCAATCCCGCGGTAGCGGTGGTGGAGGCGGTGGCGGTTATGGCCGTGGAGGCGGTGGTGGTGGGTATGGAGGTGGTGGAGGTTACAGCCGTGGAGGCGGTGGTGGAGGATATGGTGGAGGTCGTCGTGATGGTGGTGGCTACAGTAGAGGTGGCGGCGGTGGAGGATATGGAGGTGGCGGTGGTGGTTATGGAGGAGGCGGCGGTGGTTATGGAGGAGGTGGTGGCGACCGTGGATATGGTGGTGGTGGTGGCGGATCCCGTTACTCTAGGGGTGGTGGTGACTCTGAAGGTGGCTGGAGGAGTTAA 558 0.5645 MASGDVEYRCFVGGLAWTTDSEALEKAFSAYGEIVDSKVINDRETGRSRGFGFVTFANEQSMRDAIEALNGQDLDGRNITVNEAQSRGSGGGGGGGYGRGGGGGGYGGGGGYSRGGGGGGYGGGRRDGGGYSRGGGGGGYGGGGGGYGGGGGGYGGGGGDRGYGGGGGGSRYSRGGGDSEGGWRS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0236 185 MobiDBLite consensus disorder prediction 158 185 - -
Lan13g0236 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lan13g0236 185 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 140 - -
Lan13g0236 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Lan13g0236 185 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Lan13g0236 185 Gene3D - 2 123 IPR012677 -
Lan13g0236 185 SMART rrm1_1 9 82 IPR000504 GO:0003723
Lan13g0236 185 PANTHER GEO13361P1-RELATED 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0236 Lan-Chr13 1468180 1469294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0236 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 39.241 1.48e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0236 - K13195 ccaj:109800369 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0236 13 1468180 1469294 Lan13g0236 13 1468180 1469294 ECH
Lan7g0150 7 918675 919704 Lan13g0236 13 1468180 1469294 LSH
Lan8g1788 8 24467485 24468556 Lan13g0236 13 1468180 1469294 LSH