Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0233 ATGTTGCACTGTCTCAACACTTCAGGGAATGTAGGTGGAACATGTTCAGATATGAAAGTGTTTGAAATACAAAGATCAAGGAAGAAATGGCTACAACAAAACCACGAAGAGCAACAACAACAACAACAACAACATCATCAAGGATTGATGATGATGATGATGGGTTGTGGTGATTCAGTGCTTGGTGATGTGGTGGCTCAATCAATGAAATCTGACCCGGGTTTGGAAAATGGGTTACCCGAATTGGGAATGTTTGAAATGGGATTCGGGTCTTCTTTATTGCCACGTGCTTCTGGGTTTGATGTTAATTCCTCTGTTTCAAGGACTTGTAGCAGAGACATGGCTTTACCAACGCAAAAGAAAGAAACATTCAAGAAGAGGAAAGCTGAAAAGATTCAGAATTCAAAGGTTGTAGCAGAAAGTGATAGCAAAGAGAAGAAGATTAAAGTAAGTGGGGATGAAGAGGAATCCAACAACAAGAATACAAAGGCAAAGGCAAACACAAATAAGAACAACAAGGAAGCGTGTGGTGAAAGTTCGAAGGAGAATTCGAAAGGGTCTGAGGTTCAAAATCCAAAGCCCGATTACATTCATGTTCGAGCACGCCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAGATTAGCGAGCGGATGAAGTATTTACAAGATTTAGTGCCAGGTTGCAACAAAATCACAGGGAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAATCTCTTCAGCGACAAGTTGAGTTCTTGTCAATGAAACTAGCTGCTGTAAACCCAAGGCTTGACTTCAACATTGATGATTTGTTTGCCAAAGAGGTATTCCCGGCTTGTTCTTCAAGTTTTCCAAACATCGGGGTGCAATCAGACCTAACTACTACTAACCCTGCATATCTTCACTTCAATCCAGCACAACTTGTTTCATGCTGTAGTGGATTAATGAACAACATGGGAATAAACCTTTCAGATCCGGGGCTTCGTAGGACTACTAGTGCACCTGTATCTTTGCCTGAAACATTTATTGACTCATCATCTTGCTTCACTCAAATTTTACCTTCCTCAACTTGGGAAGGAGATTTCCAAAACCTTTATAATAATGTGGCTTTCGATCAAGCGCGAACAGCATCATTTCCTTCTCAACCATTTACAGGACTAGTTGACACTAGCAATCTAAAGATGGAGATGTAG 1221 0.407 MLHCLNTSGNVGGTCSDMKVFEIQRSRKKWLQQNHEEQQQQQQQHHQGLMMMMMGCGDSVLGDVVAQSMKSDPGLENGLPELGMFEMGFGSSLLPRASGFDVNSSVSRTCSRDMALPTQKKETFKKRKAEKIQNSKVVAESDSKEKKIKVSGDEEESNNKNTKAKANTNKNNKEACGESSKENSKGSEVQNPKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDLFAKEVFPACSSSFPNIGVQSDLTTTNPAYLHFNPAQLVSCCSGLMNNMGINLSDPGLRRTTSAPVSLPETFIDSSSCFTQILPSSTWEGDFQNLYNNVAFDQARTASFPSQPFTGLVDTSNLKMEM* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0233 406 CDD bHLH_AtBPE_like 195 280 - -
Lan13g0233 406 MobiDBLite consensus disorder prediction 118 161 - -
Lan13g0233 406 MobiDBLite consensus disorder prediction 100 195 - -
Lan13g0233 406 SMART finulus 211 261 IPR011598 GO:0046983
Lan13g0233 406 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 386 IPR024097 GO:0006355
Lan13g0233 406 MobiDBLite consensus disorder prediction 100 116 - -
Lan13g0233 406 Gene3D - 202 276 IPR036638 GO:0046983
Lan13g0233 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 274 IPR036638 GO:0046983
Lan13g0233 406 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 16 386 - -
Lan13g0233 406 Pfam Helix-loop-helix DNA-binding domain 209 256 IPR011598 GO:0046983
Lan13g0233 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 255 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0233 Lan-Chr13 1436082 1439328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0233 118 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 44.928 6.96e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan13g0233 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0233 - - gmx:100794256 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0149 7 907755 910896 Lan13g0233 13 1436082 1439328 LSH
Lan8g1791 8 24490985 24494049 Lan13g0233 13 1436082 1439328 LSH