Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0210 ATGAAGATCCAGTGTGATGTTTGTCACAAGGAGGAAGCAACTGTGTTCTGTTCTGCAGATGAAGCTTCTCTCTGCCATGCCTGTGATCATACCATCCACCATGCTAACAAGCTTGCAAGCAAACACAAACGCTTCTCTCTTCACAATCCCACCTCCAAACACACACCTCTTTGTGATATCTGTCAAGAGAGGCGTGCATATATCTTTTGCCGAGAAGATAGAGCAATACTTTGCACAGAATGTGACCTTCCTATTCATAGAACCAATGAAAATACCCAGAAACATAACAGGTTTCTTCTCACAGGTGTGAAGGTTGGTGCAGCTTGCTCCTCAAACCCAACATTGCTATGCTCCAATAGCAACACTACTGAAATCGAATTAAGAAACTCTTGTTCTAAAGCAAACATGTCTAGTGACACGGGTTCAGTTTCAACAAGTAGTATTTCTGAATATTTGACAGAGACCATACCTGGTTACTGCATGGAAGACCTTCTTGATGCTTCTTTTTCAACTAATGGGTTCTTCTATAAGGATTATGAGTATGACTTGAAGTTTCAACACCAAGATCTTTTTCAAGAAAACATGTGCTCTTTTCCATTTGCATCTTGTTCACCACAATCTCAAGTTAGATCCTCTCAATTCAGCACTTCGAATGTTCCACAGATTGATTATTCAGTTGGAGTTAAGGAAGTGACAAAAGCCAAAGCTGTTGAAGGATACTATAATGGCTACATAGTCCCTTCAGTTACTCCTCCTTTGATAAAAAAGAGTAGACGCTCTCGTTGA 786 0.4033 MKIQCDVCHKEEATVFCSADEASLCHACDHTIHHANKLASKHKRFSLHNPTSKHTPLCDICQERRAYIFCREDRAILCTECDLPIHRTNENTQKHNRFLLTGVKVGAACSSNPTLLCSNSNTTEIELRNSCSKANMSSDTGSVSTSSISEYLTETIPGYCMEDLLDASFSTNGFFYKDYEYDLKFQHQDLFQENMCSFPFASCSPQSQVRSSQFSTSNVPQIDYSVGVKEVTKAKAVEGYYNGYIVPSVTPPLIKKSRRSR* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0210 261 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Lan13g0210 261 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 259 - -
Lan13g0210 261 Gene3D Classic Zinc Finger 1 96 - -
Lan13g0210 261 CDD Bbox1_BBX-like 57 100 - -
Lan13g0210 261 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 259 - -
Lan13g0210 261 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan13g0210 261 CDD Bbox1_BBX-like 5 47 - -
Lan13g0210 261 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lan13g0210 261 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lan13g0210 261 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0210 Lan-Chr13 1316222 1317977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0210 1 174 C2C2-CO-like Transcription Factor Family AT1G75540 48.780 6.26e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan13g0210 zf-B_box 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0210 - - gmx:100790232 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0210 13 1316222 1317977 Lan13g0210 13 1316222 1317977 ECH
Lan7g0130 7 787731 788891 Lan13g0210 13 1316222 1317977 LSH
Lan8g1810 8 24603008 24604413 Lan13g0210 13 1316222 1317977 LSH