Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0202 ATGGAAATTGCGAAAGCGTTGAAACCAACAAGCTTGCAGAGGGAGTTTATTTTCCAACAAACACATTGCAAGGATATTTTGTGCTTTAATGTTGCCAACAACGTTGTTGCACCTGAAGATTTCTCCATCGATGACCTACTTGACTTCTCCAACGTAAAAGAAGTTCATGGCAACTACGAAGAAAACGAAGAAAAAGATAGCGCCTTAGAGTCACAGAACTACAGAGAAGATGATCGCAACTCCAATTCCACCGTCACTGGTGGCTCTCACTCCATTTTCGCCATTGAATTTCCCGTTCCGGATGATGATTTGGTGGAACTGGAATGGGTTTCTCACTTTGTAGACGATTCACGGTCGGAGCTATCTCTTTTGAATCATGTTCCTTCAGAGCAACCACGGGCTTGGGCCAAACCCAAAACTGAACCGGGCTTATCAAAACCTCTGTTACTTCCCTCAGTAGTACCCGTAAAGCCTAGAACCACCAGGTCTAGAAAGCCCAACAATCGCCTCTGGTTTTTTAACTCCATGCTCTCTGAGTCGCTCCCTCTCATGTTAGCTTGCGAGCCACCGAAGAAGAAGCAGAAGAAAAAGATTGAGACACAAACCAGTGGTGACCAGCTTCAGCAATGCTGCAATCATTGCAAGGTGCAGGAGACGCCACAGTGGAGGACCGGTCCACTTGGGCCGAAAACTCTTTGCAACGCTTGTGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCGGAGTATAGACCGGCTTGCAGCCCCACTTTCTCTAGTGATATTCATTCCAACCGCCATCGTAAAGTGTTGGAGATGAGGCGCATGAAAGAGGTGGATGGTCCGGAGACCGGTTTGGACCGGGTTCAAATGGTTCTAAGTTGA 882 0.4762 MEIAKALKPTSLQREFIFQQTHCKDILCFNVANNVVAPEDFSIDDLLDFSNVKEVHGNYEENEEKDSALESQNYREDDRNSNSTVTGGSHSIFAIEFPVPDDDLVELEWVSHFVDDSRSELSLLNHVPSEQPRAWAKPKTEPGLSKPLLLPSVVPVKPRTTRSRKPNNRLWFFNSMLSESLPLMLACEPPKKKQKKKIETQTSGDQLQQCCNHCKVQETPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSSDIHSNRHRKVLEMRRMKEVDGPETGLDRVQMVLS* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0202 293 ProSiteProfiles GATA-type zinc finger domain profile. 211 241 IPR000679 GO:0006355|GO:0043565
Lan13g0202 293 SMART GATA_3 205 259 IPR000679 GO:0006355|GO:0043565
Lan13g0202 293 MobiDBLite consensus disorder prediction 58 86 - -
Lan13g0202 293 PIRSF Txn_fac_GATA_plant 15 291 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lan13g0202 293 Gene3D - 205 255 IPR013088 GO:0006355|GO:0008270
Lan13g0202 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 267 - -
Lan13g0202 293 PANTHER GATA TRANSCRIPTION FACTOR 3 291 - -
Lan13g0202 293 CDD ZnF_GATA 211 267 IPR000679 GO:0006355|GO:0043565
Lan13g0202 293 Pfam GATA zinc finger 211 244 IPR000679 GO:0006355|GO:0043565
Lan13g0202 293 PANTHER GATA TRANSCRIPTION FACTOR 3 291 - -
Lan13g0202 293 MobiDBLite consensus disorder prediction 58 77 - -
Lan13g0202 293 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0202 Lan-Chr13 1262353 1263539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0202 40 279 C2C2-Gata Transcription Factor Family AT4G36240 44.672 5.68e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan13g0202 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0202 - - adu:107476627 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0127 7 761074 762739 Lan13g0202 13 1262353 1263539 LSH