Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0178 ATGGGAAGGTCTCCTTGTTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACTAAAGAAGAAGATGATAGACTCATTTCTTATATTCGTTCTCATGGTGAAGGAAGTTGGCGTTCTCTTCCCAAAGCTGCTGGTCTTCTCCGGTGCGGCAAAAGCTGCCGTCTACGGTGGATCAATTACCTCCGTCCTGATCTCAAACGTGGCAACTTTACTGAAGAAGAAGATGAACTCGTCATCAAACTCCATAGTCTTCTTGGTAACAAGTGGTCTTTGATAGCAGCGAGATTACCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACTCATATAAGGAGAAAGCTTATGAGTAGAGGAATTGACCCTGCAACTCATAGGCCTCTTAATGATGCTGAGAATCGTGTTCAAGATCATGAAGTTAAAGCATCTGTTGCAGCAACCAATACAATATCTTTTGCTTCATCAGCTTCTGCTGCTGCTGTTGTTGTTAAACAAGAACAAGATCCTAGTATTACTAGTAAATCAAGCATGTTTGGGGTTGTTGATGGCAAAGGAACTTTGTTAGAACGTTGCCCTGATTTGAATCTTGAGTTAACAATTAGTCCTCCTCGTTTGAATGAGCCTGAGCAACCATTCAAGAACATGGATAGAAGCATTTTCTTCGGTTACAATTTGGGTATGCAGAATAGCAATGATTCTAGTGACATTGGCAACAGCACTAGTAGTGGGAAGAGAAATAGTACTAGTACTGGTTATGATTTCTTGGGCTTGAAAACTGGTGTTTGGGATTACAGAAGACTGAAAATGAAATGA 816 0.4081 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRSHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELVIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIRRKLMSRGIDPATHRPLNDAENRVQDHEVKASVAATNTISFASSASAAAVVVKQEQDPSITSKSSMFGVVDGKGTLLERCPDLNLELTISPPRLNEPEQPFKNMDRSIFFGYNLGMQNSNDSSDIGNSTSSGKRNSTSTGYDFLGLKTGVWDYRRLKMK* 272
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0178 271 SMART sant 13 63 IPR001005 -
Lan13g0178 271 SMART sant 66 114 IPR001005 -
Lan13g0178 271 CDD SANT 69 112 IPR001005 -
Lan13g0178 271 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lan13g0178 271 CDD SANT 16 61 IPR001005 -
Lan13g0178 271 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 235 - -
Lan13g0178 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan13g0178 271 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan13g0178 271 Gene3D - 14 66 - -
Lan13g0178 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan13g0178 271 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 235 - -
Lan13g0178 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan13g0178 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan13g0178 271 Gene3D - 68 144 - -
Lan13g0178 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan13g0178 271 Coils Coil 129 149 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan13g0178 Lan-Chr13 1086793 1088091 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0178 1 271 MYB Transcription Factor Family AT4G38620 55.634 2.98e-101 295
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan13g0178 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0178 K09422 - pop:7494250 348.591
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0178 13 1086793 1088091 Lan13g0178 13 1086793 1088091 ECH
Lan7g0110 7 598639 599915 Lan13g0178 13 1086793 1088091 LSH
Lan8g1832 8 24740008 24741060 Lan13g0178 13 1086793 1088091 LSH