Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0169 ATGGGTTCTGAGAGATTAACTGGGAAGGTGAAATGGTTCAATGACACCAAGGGATTCGGATTCATTACCCCTGATGATGGTGGTGAGGAACTTTTTGTTCATCAATCTCAGATAAAATCTGATGGTTTTCGATCCCTCGCTGAAGGTGAATCCGTTGAGTTTCAAATCGAAGCTGATTCCGATGGCCGATCTAAGGCCGTTGATGTCACCGGTCCTGATGGTGCTAACGTCCAGGGTAGCCGACGCGGCGGCGGCGGTGGCGGTGGAGGAGGCTATGGTGGTGGAGGTGGTTATGGCGGTGGTAGAGGTGGGGGAGGTTATGGTGGTGGCGGTGGTGGTGGAGGTTGTTACAGCTGTGGTGAGTCTGGTCACATTGCTAGGGAGTGTCCTCAAGGGGGTGGCGGTGGCGGTGGAAGGTATGGAGGCGGTGGTGGTGGCGGTGGAAGGTATGGAGGCGGTGGTGGTGGAGGAGGAGGTGGTGGCGGTGGCTGCTACAACTGTGGGGAATCTGGTCATTTTGCAAGAGATTGCACAACTTCCGGTGGTCGTTGA 552 0.5543 MGSERLTGKVKWFNDTKGFGFITPDDGGEELFVHQSQIKSDGFRSLAEGESVEFQIEADSDGRSKAVDVTGPDGANVQGSRRGGGGGGGGGYGGGGGYGGGRGGGGYGGGGGGGGCYSCGESGHIARECPQGGGGGGGRYGGGGGGGGRYGGGGGGGGGGGGGCYNCGESGHFARDCTTSGGR* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0169 183 PANTHER COLD SHOCK PROTEIN 2 141 181 - -
Lan13g0169 183 PANTHER COLD SHOCK PROTEIN 2 1 148 - -
Lan13g0169 183 SUPERFAMILY Retrovirus zinc finger-like domains 99 136 IPR036875 GO:0003676|GO:0008270
Lan13g0169 183 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lan13g0169 183 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lan13g0169 183 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lan13g0169 183 Gene3D - 2 83 IPR012340 -
Lan13g0169 183 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Lan13g0169 183 SUPERFAMILY Retrovirus zinc finger-like domains 145 178 IPR036875 GO:0003676|GO:0008270
Lan13g0169 183 SMART csp_8 7 72 IPR011129 GO:0003676
Lan13g0169 183 SMART c2hcfinal6 115 131 IPR001878 GO:0003676|GO:0008270
Lan13g0169 183 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Lan13g0169 183 Gene3D - 160 183 - -
Lan13g0169 183 Gene3D - 112 139 - -
Lan13g0169 183 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lan13g0169 183 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lan13g0169 183 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lan13g0169 183 ProSiteProfiles Zinc finger CCHC-type profile. 116 131 IPR001878 GO:0003676|GO:0008270
Lan13g0169 183 ProSiteProfiles Zinc finger CCHC-type profile. 164 177 IPR001878 GO:0003676|GO:0008270
Lan13g0169 183 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 148 - -
Lan13g0169 183 PANTHER COLD SHOCK DOMAIN PROTEIN 2 141 181 - -
Lan13g0169 183 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lan13g0169 183 Pfam Zinc knuckle 163 178 IPR001878 GO:0003676|GO:0008270
Lan13g0169 183 Pfam Zinc knuckle 115 131 IPR001878 GO:0003676|GO:0008270
Lan13g0169 183 MobiDBLite consensus disorder prediction 57 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0169 Lan-Chr13 1018118 1019151 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lan13g0169 CSD 7.3e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0169 - K09250 lang:109325901 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0169 13 1018118 1019151 Lan13g0169 13 1018118 1019151 ECH
Lan7g0103 7 549326 550276 Lan13g0169 13 1018118 1019151 LSH
Lan8g1834 8 24754049 24755040 Lan13g0169 13 1018118 1019151 LSH