Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0159 ATGGCTTCTTCATTCGTCAAACTCGATGATTCCCCAATGTTCCAGAAGCAGTTATTTTCTCTTGAAGAAACGACTGGCGAGTTAAAGGACCGGTGCCAGAAACTATTTAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGCGAAGAATATAATGGGGAAATTTCCTTTGCTGATTCATTAGAAGCATTTGGCGGTGGCCAGGATGACCCTGTTAGTGTATCAATTGGAGGGCCAGTCATATCTAAGTTTATTACCACACTGCGTGAGCTAGCTAGTTTTAAAGAGCTTCTCCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACGGAGTTTATGACTGTTGATTTGCAAGATGCGAAGGACTCTCGCCGCCGTTTTGACAAAGCTGTGAATTCTTATGATCAGTCACGAGAGAAGTTTGTGTCTTTGAAGAAAAATACGCCGGGAGACGTTGTTGCTGAATTAGAAGAGGATCTACAAAATTCAAAGTCAGCATTTGAAAAAAGTCGCTTCAATCTAGTGCACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCGTTAGTGCAATAATGGATGCTCATCTGAGATACTTTAAGTTGGGTTATGAGTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACATATGCTCAACAATCTAAAGAAATGGCTAATATCGAGCAAGATAAGCTTGCAAAACGAATCCAGGAATACCGAACCCAGGCCGAGCTGGAAAATATACGAGCTTCTAGCAATACAGAACCCTTGCCAAATGCTGATAGCACCCATGTTGTAGGCTTGAACTCTTACAAAAGTTTTGAAGCAGGGAAGCAGCCTGAAACCAAAGGGGAGGTTCAAACAGTTAAACAAGGCTATCTGTTGAAACGATCATCAAGCTCGCGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCGAGGGAGTTTATATTATTACAGAGTGAAAGGAGGCAAACCCATGGGCTCTCAGTCATATCATTATACTCGTTCTGGTGAACAAAACAGTGGCATGTTTGGTAGATTTCGTTCAAGGCACAACAGGGCAGCATCGCTAAATGAGGATATTTTGGGTTGCTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGAATACAGATCTACGACTTTGCTTCCGTATAATTTCGCCCTCAAAGTCATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCCATCGCATCACTTTTTAATTCTCAGTTTCTTCAGCCTCATTATGGTAGATTACATTTTGAAAATAAAAACTCAGCAGGTGGTGCTTCCTTGACTAGCCAAACAGAGGATAGTAATAGATCTTTGATGGATGACATATATTCCAAGGAAGTGGTTAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAATGCAGTGCTCCTGAACCAGAATGGGCATCTTTAAATCTTGGCATATTGCTGTGCATTGAATGCTCTGGGGTGCATCGAAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTCAAGGTTTGGGAACCTGCTGTTTTAGAGTTGTTTGATAACTTGGGTAATGCTTATTGTAATTCTATTTGGGAGGGCTTGCTTCTACTGAATGATGAAAGAGTAGTTGAATCAAATGCGCCTATGAAACCATGCTCCACAGATGCCTTCCAATACAAAGAAAAGTACATCCAAGCTAAGTATGTAGAGAAATCACTAATCATCAGAGAAGAGGATATACCCAGGAATCCTTCACTTTCCATAAGGATCTGGCAAGCAGTTCAGGCTATCAATGTAAAAGAAGTGTATCGCCTTATAGTTACATCAAATTCAAATCTGATAAACATGACATACGATGACGTGGTTCACCATGTTGATGGTGAAGATTTGAACTTAGGATCTATAAATGAACATCAGCATGATCCTGAAGCTTGTCTGAGAGTTAAAGATACTAATGAGACCGAGAGGTGTTTCCTTGGCTGGTCATTATTACATCTGGCATGTCATTCTGGCAGTCCACTAATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGTGTGACTATCATGGAAGGACCCCATTGCACCATTGCATTTCCACTGGGAAGAATCCATTGGCAAAATTTCTATTGAGAAGGGGCGCTAAGCCGTCAGTTAAAGATGCTGGTGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATATCCGACGAAGAGCTATTTATCAAGCTTGCTGAATGCCAGTAA 2343 0.4123 MASSFVKLDDSPMFQKQLFSLEETTGELKDRCQKLFKGCKKFMTALGEEYNGEISFADSLEAFGGGQDDPVSVSIGGPVISKFITTLRELASFKELLRSQVEHVLIDRLTEFMTVDLQDAKDSRRRFDKAVNSYDQSREKFVSLKKNTPGDVVAELEEDLQNSKSAFEKSRFNLVHSLMNIEVKKKYEFLESVSAIMDAHLRYFKLGYELLSQMEPYIHQVLTYAQQSKEMANIEQDKLAKRIQEYRTQAELENIRASSNTEPLPNADSTHVVGLNSYKSFEAGKQPETKGEVQTVKQGYLLKRSSSSRGDWKRRFFVLDNRGSLYYYRVKGGKPMGSQSYHYTRSGEQNSGMFGRFRSRHNRAASLNEDILGCCTVDLCTSTIKMDAENTDLRLCFRIISPSKSYTLQAENEADRMDWVNKITGAIASLFNSQFLQPHYGRLHFENKNSAGGASLTSQTEDSNRSLMDDIYSKEVVSVSKILRGIPGNDKCAECSAPEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPAVLELFDNLGNAYCNSIWEGLLLLNDERVVESNAPMKPCSTDAFQYKEKYIQAKYVEKSLIIREEDIPRNPSLSIRIWQAVQAINVKEVYRLIVTSNSNLINMTYDDVVHHVDGEDLNLGSINEHQHDPEACLRVKDTNETERCFLGWSLLHLACHSGSPLMVELLLQFGADVNMCDYHGRTPLHHCISTGKNPLAKFLLRRGAKPSVKDAGGLTVLERAMEMGAISDEELFIKLAECQ* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0159 780 Gene3D Arf GTPase activating protein 459 609 IPR038508 -
Lan13g0159 780 Gene3D - 288 438 IPR011993 -
Lan13g0159 780 ProSiteProfiles Ankyrin repeat region circular profile. 720 751 - -
Lan13g0159 780 SUPERFAMILY Ankyrin repeat 680 774 IPR036770 -
Lan13g0159 780 CDD ArfGap 481 596 - -
Lan13g0159 780 Pfam Putative GTPase activating protein for Arf 481 601 IPR001164 GO:0005096
Lan13g0159 780 Gene3D - 615 773 IPR036770 -
Lan13g0159 780 ProSiteProfiles ARF GTPase-activating proteins domain profile. 477 609 IPR001164 GO:0005096
Lan13g0159 780 PANTHER CENTAURIN/ARF 3 776 IPR045258 GO:0005096
Lan13g0159 780 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Lan13g0159 780 SMART ANK_2a 720 749 IPR002110 GO:0005515
Lan13g0159 780 SMART ANK_2a 687 716 IPR002110 GO:0005515
Lan13g0159 780 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Lan13g0159 780 ProSiteProfiles Ankyrin repeat profile. 687 719 IPR002110 GO:0005515
Lan13g0159 780 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 776 - -
Lan13g0159 780 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Lan13g0159 780 SMART PH_update 295 430 IPR001849 -
Lan13g0159 780 CDD BAR_SFC_plant 16 217 IPR035670 -
Lan13g0159 780 Pfam PH domain 296 427 IPR001849 -
Lan13g0159 780 Pfam BAR domain of APPL family 8 232 - -
Lan13g0159 780 SMART arf_gap_3 477 609 IPR001164 GO:0005096
Lan13g0159 780 SUPERFAMILY ArfGap/RecO-like zinc finger 480 602 IPR037278 -
Lan13g0159 780 SUPERFAMILY PH domain-like 295 438 - -
Lan13g0159 780 PRINTS HIV Rev interacting protein signature 489 508 IPR001164 GO:0005096
Lan13g0159 780 PRINTS HIV Rev interacting protein signature 508 525 IPR001164 GO:0005096
Lan13g0159 780 PRINTS HIV Rev interacting protein signature 531 552 IPR001164 GO:0005096
Lan13g0159 780 ProSiteProfiles Ankyrin repeat region circular profile. 687 718 - -
Lan13g0159 780 Coils Coil 229 249 - -
Lan13g0159 780 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Lan13g0159 780 CDD PH_ACAP 297 432 - -
Lan13g0159 780 Pfam Ankyrin repeats (many copies) 689 741 IPR002110 GO:0005515
Lan13g0159 780 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0159 Lan-Chr13 958250 968229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0159 489 596 C2H2 Transcription Factor Family AT4G21160 39.450 2.89e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0159 K12489 - gmx:100796006 1348.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0095 7 508987 517318 Lan13g0159 13 958250 968229 LSH