Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0155 ATGTGTTATGATATTGGGCTTTTCAGGCTCTCGACTTGGATAAGGGAGTATTGTACCACAATGAGTTCTCGGACAGGCAGGACACCTGTTAGAAGTTACCGCCGAAGAAAGATAGTTTTGGACATTGACCTTAACTATGTGCCATCTGGTGAAAATCGGGAGCAGGAAGGACCTTCAATTCAGTTGGCGCCTCAACAAGTGCAAGTTGTCCAGCAACCTCAGGCTGTACAAGAACCCCCAATTCAGTTGGGCACTGGACAAGTTCAAGCTGTTCGGCAAATGCAGGCTGTACAACCTCCAACAATTGATGTGGAGGCTTTTGATGATGATGTTATTGAGTCTAACCCAAGGGCTTTCGCTGAGGCTAAAAATAAAAACAATTCGAGAAGAAATCGCAGAAGGACTATAGTTGATGTGGATTTAGAAGATCAGACTCGGGTAACCAACAATAGCTGCAACAAACGCAACAGAGTCTCCCCAGGCCAGCGAATTATTAACTGTGATCATTATGATCTTTGTATAAATCTGGAAGTCAGTAACAGTGATATGATGAAACATATGCCACCACCTGAACCTCCAAAAGAGCCTGTCTTCAACTGTCCAATATGTATGGGTCCTTTGGTAGAAGAAGTATCAACGAAGTGTGGTCACATTTTTTGCAAGGCTTGCATCAAGGCTGCAATTAGCGCTCAGAATAAATGCCCTACATGCAGAAAGAAGATTACTGTAAGGGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 768 0.4349 MCYDIGLFRLSTWIREYCTTMSSRTGRTPVRSYRRRKIVLDIDLNYVPSGENREQEGPSIQLAPQQVQVVQQPQAVQEPPIQLGTGQVQAVRQMQAVQPPTIDVEAFDDDVIESNPRAFAEAKNKNNSRRNRRRTIVDVDLEDQTRVTNNSCNKRNRVSPGQRIINCDHYDLCINLEVSNSDMMKHMPPPEPPKEPVFNCPICMGPLVEEVSTKCGHIFCKACIKAAISAQNKCPTCRKKITVRELIRVFLPSTS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0155 255 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Lan13g0155 255 PANTHER RING ZINC FINGER-RELATED 22 255 - -
Lan13g0155 255 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Lan13g0155 255 SUPERFAMILY RING/U-box 195 250 - -
Lan13g0155 255 PANTHER ELFLESS, ISOFORM B 22 255 - -
Lan13g0155 255 SMART ring_2 200 237 IPR001841 -
Lan13g0155 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 253 IPR013083 -
Lan13g0155 255 Pfam Zinc finger, C3HC4 type (RING finger) 199 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0155 Lan-Chr13 939712 944048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0155 31 254 C3H Transcription Factor Family AT5G48655 47.111 1.15e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0155 K22651 - gmx:100306616 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0092 7 496286 498747 Lan13g0155 13 939712 944048 LSH
Lan8g1843 8 24804166 24808585 Lan13g0155 13 939712 944048 LSH