Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0154 ATGGCTCCCAAAAAAGGTGTAAAGGCTCCAGTTTCAGCTTCTAAGAAGAAGCCAGAGAAGATTACGAATCCGCTTTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGAGCATTGCCTCCAAAGAGGGATTTGACACGATTTGTGAAATGGCCAAAGACTGTTCAAATTCAGAGGAAGAAGAGGATCCTTAAGCAGAGATTGAAGGTCCCACCTGCTTTGAACCAGTTCACTAAGACACTTGACAAGAACTTAGCAACAAGCCTGTTCAAGATACTTCTTAAGTACAGGCCCGAGGAAAAGGCAGAGAAGAAGGAGAGGCTTTTGAAAAGAGCTCAGGCAGAAGCTGATGGCAAACCTCTTGAAGCAAAGAAGCCGATTGTTGTGAAATATGGTCTCAACCATGTTACCTATCTTATTGAGCAGAATAAGGCACAACTGGTTGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTCTGGCTCCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCTCGCTTGGGAACGGTCGTCCACAAGAAAACCGCATCAGTCTTGTGCTTGACCACTGTTAAGAATGAAGACAAATTGGAGTTCAGCAGAGTCCTAGAGGCTATTAAGGCTAACTTCAATGACAAGTATGATGAGTACAGAAAGAAGTGGGGTGGTGGTATTATGGGTTCCAAGTCCCAAGCCAAGACCAAGGCTAAGGAAAGGCTTATTGCCAAGGAAGCAGCTCAGAGGTTGACCTAG 780 0.4564 MAPKKGVKAPVSASKKKPEKITNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEEKAEKKERLLKRAQAEADGKPLEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRLT* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0154 259 ProSitePatterns Ribosomal protein L7Ae signature. 167 184 IPR004037 GO:0042254|GO:1990904
Lan13g0154 259 SUPERFAMILY L30e-like 89 230 IPR029064 -
Lan13g0154 259 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Lan13g0154 259 PRINTS Ribosomal protein L7A/RS6 family signature 148 161 IPR018492 -
Lan13g0154 259 PRINTS Ribosomal protein L7A/RS6 family signature 164 174 IPR018492 -
Lan13g0154 259 PRINTS Ribosomal protein L7A/RS6 family signature 174 188 IPR018492 -
Lan13g0154 259 PANTHER BNAA03G47020D PROTEIN 2 257 - -
Lan13g0154 259 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 119 206 IPR004038 -
Lan13g0154 259 MobiDBLite consensus disorder prediction 1 23 - -
Lan13g0154 259 Gene3D - 51 234 IPR029064 -
Lan13g0154 259 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 257 - -
Lan13g0154 259 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Lan13g0154 259 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Lan13g0154 259 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Lan13g0154 259 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Lan13g0154 259 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Lan13g0154 259 PRINTS Ribosomal protein L7A family signature 186 210 IPR001921 -
Lan13g0154 259 PRINTS Ribosomal protein L7A family signature 218 238 IPR001921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0154 Lan-Chr13 935207 937297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0154 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 86.873 2.03e-170 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0154 K02936 - jre:108984551 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0091 7 492383 494570 Lan13g0154 13 935207 937297 LSH
Lan8g1844 8 24810633 24812782 Lan13g0154 13 935207 937297 LSH