Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0144 ATGGCCAAGTCCAGCAAGAAATCCGCTTCCAAAGCTGATGCTGCTCCAGCTGCAGCAGTTCCACCTTCCAAGTCTGCCAAAAAGAGCAAGAGGCAGCCAGAAGATGAAATTGAGAAGCAGGTGAGTGCTAAGAAGCAGAAGGTAGAGGTGGTTGCCCAGAAGCAAAAGAAGGAAGCAAAGCTGCAAAAGGTTAAGAAGGAAAGTAGTTCAGATGATTCATCATCAGAATCTGAAGATGAGAAACCTGCTGCAAAGGTTGTTGTTCCTTCAAAAAAGCAACCAGCTGCTGAGAAACCAAAGGTGCAGAAGAAGGAAAGTAGTTCTGATGATTCCTCTTCAGAGTCAGAAGATGAGAAACCTGCAGCAAAGAAAAGCAAGCCAGCACCCCCTTCTAGCTCTTCTGATGAATCATCTGATGAGGATGAAGCTCCAAAATCCAAGGTGGCTGCTGTTAAGAAGGGCTCTGCTCCCGCAAAGAAGAATGTGCAGCCTAGTGAGAGCTCTGAGTCATCTGAGTCTGACTCCGACGACAGTTCTGATGAGGACAATGCAACTAAACCTTCCAAGAAATTGCCTGCCGCTGCTGCTAAGAAATTGCCTGCCGCTGCTGATAAGAAATTGCCTGCTAAGAAGGCTGAATCAGACTCATCCTCTGACAGTAGTTCAGATGAAGATGATGTAAAGCCTACTGTAACTGCTGTGTCCAAGGCTGCTGCTCTGAAGAAAGAAGTTGACAGCTCAGATTCAGATGATAGCAGCTCTGATGAAGATGATAAAAATGCTGGCAAGTCGGTGCCTGTTTCTAAGCAGCCCACAAAGAAGTCAAAAAGTAGTTCTGATGAGAGTGATTCAGATGATGAAGAGGATTCCTCTGATAGTGATGCTGATGAAAAAAAGAAGAATGCTAAAGCTTCTAATGGTAACAAGAAACCCACACCTGTTGTGAAGGTGGTGAAAACTGAGTCCAGTGATAGCTCATCAGACGATGAGGTAAAGATGGATGTTGATGAGGATGATAGTAGCTCTGATGAAAGTGATGAGAAGCCTCGAAAGAAAAAGCCTGTAAAAGACTCAAAAGAAAGCTCTGATGATAGTTCAGAGAGTTCAGATGATTCAGAGGATGAAGATGACAAGAACAATTCCAAAACTCCCCAGAAAAGTGTTAAGGATGTGGAGATGGTTGATGCCTCATCTGGAAAGAAAACTCCTAATACCCCGGTAACACCGAAAGGAGAATATGGTGGATCAAAGACACTATATGTAGGCAACCTGTCATATAGTGTGCAGCGGTCTGATGTGGAAAATTTCTTCCAAGATTGTGGAGAAGTTGTCGATGTTCGCCTTGCAATAGATGATGATGGGAGATTTAAGGGCTTTGGACATGTTGAATTTGCAACATCAGAGGCAGCCCAAAAGGCGCTTGAGTTGCGTGACCAAGAACTGTTGAACCGTCCTGTCCGGCTTGATTTAGCTCGTGAAAGGGGTGCATATACTCCCAACAGTGGGCCTAACAGCGGTAACTGGAACAACTCATCCCAGACTGGTGGAAGAGGCCAGTCTCAGACATTATTTGTGAGGGGTTTTGATAGATCCCTTGGAGAAGATGAGTTAAGGTCTAGCCTGGAGGAGCATTTTGGTACATGCGGGCAGGTTACAAGGATATCTGTGCCAAAAGATTATGATTCTGGTGAAATTAAGGGGTTTGCTTACTTGGACTTCAAAGATGGTGAAGGCTTTAGCAAAGCTCTAGAACTCCATGAATCTGAACTCGGAGGTTATACATTATCAGTTGATGAAGCCAAACCTAGAGACAGTCAAAGCTCTGGTGGTAGAGGTGCAGGTAGGAGTGGTGGTGGCCGCTTTGGTGGTGGAAGAGGTGGTCGATTTGATGGAAGAGGCAGTGGTGGACGATTCGGCAGCGGTGGTGGTGGTCGATTTGGTGGTGGTGGCCGATTTGGTGGTGGGCGTGGTCGTGGAGGACCAAGCAGACCAAGCTTTGCCCCAGAAGGGAAGAAGACCACTTTTGCTGATGAGGATTAG 2040 0.4603 MAKSSKKSASKADAAPAAAVPPSKSAKKSKRQPEDEIEKQVSAKKQKVEVVAQKQKKEAKLQKVKKESSSDDSSSESEDEKPAAKVVVPSKKQPAAEKPKVQKKESSSDDSSSESEDEKPAAKKSKPAPPSSSSDESSDEDEAPKSKVAAVKKGSAPAKKNVQPSESSESSESDSDDSSDEDNATKPSKKLPAAAAKKLPAAADKKLPAKKAESDSSSDSSSDEDDVKPTVTAVSKAAALKKEVDSSDSDDSSSDEDDKNAGKSVPVSKQPTKKSKSSSDESDSDDEEDSSDSDADEKKKNAKASNGNKKPTPVVKVVKTESSDSSSDDEVKMDVDEDDSSSDESDEKPRKKKPVKDSKESSDDSSESSDDSEDEDDKNNSKTPQKSVKDVEMVDASSGKKTPNTPVTPKGEYGGSKTLYVGNLSYSVQRSDVENFFQDCGEVVDVRLAIDDDGRFKGFGHVEFATSEAAQKALELRDQELLNRPVRLDLARERGAYTPNSGPNSGNWNNSSQTGGRGQSQTLFVRGFDRSLGEDELRSSLEEHFGTCGQVTRISVPKDYDSGEIKGFAYLDFKDGEGFSKALELHESELGGYTLSVDEAKPRDSQSSGGRGAGRSGGGRFGGGRGGRFDGRGSGGRFGSGGGGRFGGGGRFGGGRGRGGPSRPSFAPEGKKTTFADED* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0144 679 MobiDBLite consensus disorder prediction 96 124 - -
Lan13g0144 679 MobiDBLite consensus disorder prediction 203 230 - -
Lan13g0144 679 MobiDBLite consensus disorder prediction 495 519 - -
Lan13g0144 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 417 493 IPR000504 GO:0003723
Lan13g0144 679 PANTHER BNAA08G02930D PROTEIN 373 628 - -
Lan13g0144 679 SUPERFAMILY RNA-binding domain, RBD 520 632 IPR035979 GO:0003676
Lan13g0144 679 MobiDBLite consensus disorder prediction 498 519 - -
Lan13g0144 679 Gene3D - 509 638 IPR012677 -
Lan13g0144 679 CDD RRM1_NUCLs 418 494 IPR034349 -
Lan13g0144 679 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 373 628 - -
Lan13g0144 679 CDD RRM2_NUCLs 522 600 IPR034350 -
Lan13g0144 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 521 602 IPR000504 GO:0003723
Lan13g0144 679 Coils Coil 47 67 - -
Lan13g0144 679 SUPERFAMILY RNA-binding domain, RBD 408 518 IPR035979 GO:0003676
Lan13g0144 679 MobiDBLite consensus disorder prediction 594 679 - -
Lan13g0144 679 MobiDBLite consensus disorder prediction 1 416 - -
Lan13g0144 679 SMART rrm1_1 418 489 IPR000504 GO:0003723
Lan13g0144 679 SMART rrm1_1 522 598 IPR000504 GO:0003723
Lan13g0144 679 MobiDBLite consensus disorder prediction 375 396 - -
Lan13g0144 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 523 595 IPR000504 GO:0003723
Lan13g0144 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 419 486 IPR000504 GO:0003723
Lan13g0144 679 MobiDBLite consensus disorder prediction 27 86 - -
Lan13g0144 679 MobiDBLite consensus disorder prediction 344 365 - -
Lan13g0144 679 Gene3D - 319 501 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0144 Lan-Chr13 834870 840156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0144 415 596 Eukaryotic Initiation Factors Gene Family AT4G34110 27.717 2.38e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0144 K11294 - gmx:100786132 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1858 8 24901522 24906925 Lan13g0144 13 834870 840156 LSH