Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0135 ATGGGTTTTTCCAGTAGTGGAAGAAAAAGGAAAACAAATGCCAGGAATTCAATTTCTTATAAAGTTGGTGATGTTGAATGGACCAATAATATTCCAGAGTGTCCAGTATATTACCCATCAGAAAAGGAGTTTCAGGATTCTTTTGCTTATCTACATAAGATTGTTCCAGAAGCATCAACTTTTGGTATATGCAAAATTGTTTCTCCTATAATTGCATCTATTCCTGCTTCTGTTGTCTTAACCAAAGAGAAGAAGGACTTCAAGTTTGAAACTAATGTGCAGCCCCTTCGGCTTTCTGAATGGAATGAGAAAGATAAGATCACCTTTATGAAAGGAAGAAAATACACCTATAAGGAATTTGAGGCTCTGGCAAACAAGGCCTTTCTCAGTAGATTTTACAGTTCAAGAAACCTCTCTTCTTCGTATATTGAGAAGGAGTTCTGGCGCGAAATGGCACATGGCCGTAAAGGTACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCAAATGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCCACAATCAACATTGCGCTTAGTTGACAAGGGAATTCCGGGAATTACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTACTTATATAGCATAAATTATCATCATTCAGGTGCAAATAAAATTTGGTATGGCATACCTGCCCATGAAGCCTCTCAATTTGAAGACATTGTCCTACATAATGTGTATTGCAAAAATATCTTATCAAAATATAGAGAGGATAAGGCTTTTCAACTGCTAGCATATAAAACAACAATGTTCCCTCCAAATATCTTCCTACAACATGATGTTCCAGTTTACAAGGCTGTTCAGAAGCCAGGAGAGTTTGTCATCACCTTTCCTAGAGCGTATCATGCCGGATTTAGTCATGGTTTTAATTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCATTAGGGGCTGAAGCTAGTAAGCGTTACGCGAATCTGAGAATGTTTCCTATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCAACTTTACAAATTGTCAAAAGACAGAGGTTCTAAGAACTTGGCATGTAATCATGCTACAGTCCTGTCTTTTGTGCATCTTATGCAATTTTATAAGAAGACCCTCTTGCAACTAAAAGGTTCAAAAGAGTGTTCAATTTCATCAAGAACAATAGATACCCTGATATGCTGCAACTGCCACAGAGATTGTTATGTATGTTACATGCTATGTGAGCACTGTTATTCCCATCCAATTTGTCTTTATCATGACATTGCATCAAAGAGGTGCACATGTGGTAGAGAATATACTGTTTTTAAGAGGGAAGACATGTTGGCAATGGAAGATGCTGCTACTAAGTTTGAAGAGAAAGGGAGAACATTGCAGTTGTCCGGGTTTGAGCCCAGAAAACAAAAGAAGTGA 1506 0.3811 MGFSSSGRKRKTNARNSISYKVGDVEWTNNIPECPVYYPSEKEFQDSFAYLHKIVPEASTFGICKIVSPIIASIPASVVLTKEKKDFKFETNVQPLRLSEWNEKDKITFMKGRKYTYKEFEALANKAFLSRFYSSRNLSSSYIEKEFWREMAHGRKGTVEYGVNVEGSAFSCDPNDKLGRSKWNLKNFSRLPQSTLRLVDKGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGIPAHEASQFEDIVLHNVYCKNILSKYREDKAFQLLAYKTTMFPPNIFLQHDVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAEASKRYANLRMFPIIPYEELLCKEAMQLYKLSKDRGSKNLACNHATVLSFVHLMQFYKKTLLQLKGSKECSISSRTIDTLICCNCHRDCYVCYMLCEHCYSHPICLYHDIASKRCTCGREYTVFKREDMLAMEDAATKFEEKGRTLQLSGFEPRKQKK* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0135 501 SUPERFAMILY Clavaminate synthase-like 173 376 - -
Lan13g0135 501 ProSiteProfiles JmjC domain profile. 180 350 IPR003347 -
Lan13g0135 501 SMART JmjN_1 33 69 IPR003349 -
Lan13g0135 501 Pfam JmjC domain, hydroxylase 210 333 IPR003347 -
Lan13g0135 501 Pfam jmjN domain 35 67 IPR003349 -
Lan13g0135 501 Gene3D Cupin 34 392 - -
Lan13g0135 501 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 12 486 - -
Lan13g0135 501 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 486 - -
Lan13g0135 501 ProSiteProfiles JmjN domain profile. 34 75 IPR003349 -
Lan13g0135 501 SMART cupin_9 180 350 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0135 Lan-Chr13 796631 799412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0135 30 469 JUMONJI Transcription Factor Family AT2G34880 31.407 3.56e-63 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan13g0135 JmjC 8.3e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0135 - - ahf:112732604 723.391