Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0130 ATGGATGATACAGCTGTGAGAAAGACTCAAAAGGCGGGCCGAGAAAAGTTGAGGAGGGATCGACTCAATGAACATTTTGCAGAACTGGGCAATGTTTTAGACCCTGATAGGCCGAAAAATGACAAAGCAACCATTCTAAGTGATACAATTCAATTGCTGAATGACCTTACTTCTCAAGTTAGCAAACTCAAGGACGAATATACTGCACTAAATGAAGAATCTCGTGAATTGGCTCAGGAGAAAAATGATCTCAGAGAGGAGAAGGCTTCCCTTAAATTGGATATAGAAAACTTGAATAATCAGTACCAGCAGCGACTCAGGACTGTGTTTCCGTGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCGTATCCAATGCCAGTGCCAGTCCCTCCTGGTCCGATTCCCATGCAGTTTTACCCCCACTTTGCTAATCAAAACCCTCCGGTCTTCCTCAGTCCCAGTTCAACTTATGTTCCTTATATTGCCCCGAACAGCGTTGTTGAACAACAATCCACCCAGTACATATTGCCACCTGTTCATCAAGGTAGTCAGTCCCAGGTATCAAGCAAACTAGACTCCAAACGCAAATCATCCCGGGAGAGCAGGGCTGAAAGAAGTCAGGCTTCCAATGAAGTCACTACAGACCTTGAATTAAAGACCCCTGGGTCTTCTGCAGATCATAGAAATCACAGCTAA 711 0.4459 MDDTAVRKTQKAGREKLRRDRLNEHFAELGNVLDPDRPKNDKATILSDTIQLLNDLTSQVSKLKDEYTALNEESRELAQEKNDLREEKASLKLDIENLNNQYQQRLRTVFPWTAMDHSVMMAPPSYPYPMPVPVPPGPIPMQFYPHFANQNPPVFLSPSSTYVPYIAPNSVVEQQSTQYILPPVHQGSQSQVSSKLDSKRKSSRESRAERSQASNEVTTDLELKTPGSSADHRNHS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0130 236 Gene3D - 5 85 IPR036638 GO:0046983
Lan13g0130 236 PANTHER TRANSCRIPTION FACTOR BHLH121 2 233 IPR044579 GO:0003700|GO:0055072
Lan13g0130 236 MobiDBLite consensus disorder prediction 182 196 - -
Lan13g0130 236 CDD bHLH_AtILR3_like 11 85 - -
Lan13g0130 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 75 IPR036638 GO:0046983
Lan13g0130 236 SMART finulus 12 62 IPR011598 GO:0046983
Lan13g0130 236 Coils Coil 46 108 - -
Lan13g0130 236 MobiDBLite consensus disorder prediction 182 236 - -
Lan13g0130 236 MobiDBLite consensus disorder prediction 197 211 - -
Lan13g0130 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Lan13g0130 236 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Lan13g0130 236 PANTHER TRANSCRIPTION FACTOR BHLH121 2 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0130 Lan-Chr13 755845 766352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0130 3 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 64.255 5.91e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan13g0130 HLH 5.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0130 - - cam:101491902 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0070 7 351678 354156 Lan13g0130 13 755845 766352 LSH
Lan8g1871 8 24977437 24979181 Lan13g0130 13 755845 766352 LSH