Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0119 ATGGCTTTCTTCCTTTGTTTCTTTATCTTCTTTCTTGCTTCATCTGCTTCTGCTTCTAATGAATGTGTGCACCAAAGCAAAGCTACTTATTTCTCTAAAGAATCTTCTTTTCCACATGGGGCATGTGGATATGGCTCTCTTGCACTCAACTTAACTAATGGACAGCTTGCAGGTGCTGTGCCTTCTCTCTTCAAAAATGGAGTTGGTTGTGGTGCATGCTTTCAGGTAAGATGCAATAACACAAGCCTGTGCACAAAAGAAGGTACCAGAGTAGTAGTGACTGATCTTAATCACAATAGTCAAACTGACTTTGTTCTTAGCAGCCAAGCCTTCAAGGCCATGGCAAAGAAGGATTTGGACAAAGAAATATTGAAACGTAGCATCGTTGACATTGAATATAAGAGAATACCTTGTGATTACAAAACTCATAATTTATCAGTCCGCGTAGAAGAATCAAGCAAAAAACCACATTACCTAGCACTTACATTTTTGTACCAAGGGGGTCAAACAGAGATAGTAAGCGTTGATATAGCTAAGGTTGGATCTTCAACATGGAGTTTCTTGACCAGAAACCATGGTGCAGTGTGGGACACAAGCAGGGTTCCAGAAGGTCCATTACAATTGAGGATGGTGGTAACTGGAGGGTTAGAAGGGAAAGAGATTCGGGCAAAGAAGGAAGTGTTACCTAATGATTGGAAAAATGGTGTGGTATATGACACTGGTGTTCAGATTAATGATACTTCACTATATTCTTCATGTAATGAAGGTGAAGGGACTTGGTGA 783 0.4036 MAFFLCFFIFFLASSASASNECVHQSKATYFSKESSFPHGACGYGSLALNLTNGQLAGAVPSLFKNGVGCGACFQVRCNNTSLCTKEGTRVVVTDLNHNSQTDFVLSSQAFKAMAKKDLDKEILKRSIVDIEYKRIPCDYKTHNLSVRVEESSKKPHYLALTFLYQGGQTEIVSVDIAKVGSSTWSFLTRNHGAVWDTSRVPEGPLQLRMVVTGGLEGKEIRAKKEVLPNDWKNGVVYDTGVQINDTSLYSSCNEGEGTW* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0119 260 SUPERFAMILY Barwin-like endoglucanases 9 141 IPR036908 -
Lan13g0119 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Lan13g0119 260 PANTHER EXPANSIN-LIKE A1-RELATED 5 254 - -
Lan13g0119 260 Gene3D - 11 139 IPR036908 -
Lan13g0119 260 Pfam Expansin C-terminal domain 147 225 IPR007117 -
Lan13g0119 260 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Lan13g0119 260 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Lan13g0119 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Lan13g0119 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Lan13g0119 260 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Lan13g0119 260 PANTHER EXPANSIN-B3 5 254 - -
Lan13g0119 260 Pfam Lytic transglycolase 60 130 IPR009009 -
Lan13g0119 260 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Lan13g0119 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 240 IPR007117 -
Lan13g0119 260 Gene3D - 140 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0119 Lan-Chr13 705101 706574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0119 3 248 Expansin Gene Family AT3G45960 55.645 5.81e-94 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0119 - - gmx:100305884 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0061 7 320894 322871 Lan13g0119 13 705101 706574 LSH