Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0106 ATGGAGATAGAAGCAACAAGTGGTAGCAAGAAAGAGAGTGATGAAGTGATATATGGTGACCTTAATAAGGGAAGCTACTTAGTGTGGAAAGATCTAAGATTAGTGATACCAAATTTTGGGAAAGGACCAACAAAGAGATTGCTTAATGGGATTAATGGTTATGCTGAGCCTGGTAGAATCACTGCTATTATGGGTCCTTCTGGCTCTGGAAAATCCACTCTCCTTGATTCACTAGCAGGTAGACTCTCAAAAAATGTGGTTATGACTGGAAATGTTCTTCTCAATGGAAAGAACCAAAGCTTGGGCTATGGTTTTGTTGCATACGTAACACAAGAGGATGTGCTGCTAGGAACCCTAACAGTGAAAGAAACAATATCTTATTCAGCCAATCTCCGTCTTCCAACAACAATGACCAAAGAAGAAGTTGATAACATAGTAGATGGAACAATCATAGAAATGGGTCTCCAAGATTGTGCTGATAGATTAATTGGTAATTGGCATTTGAGAGGGATAAGTGGTGGTGAGAAAAAAAGGGTTAGCATTGCACTTGAAATCCTTACAAGGCCTAGTTTATTGTTTCTTGATGAACCAACTAGTGGTCTTGATAGTGCTTCAGCATTTTTTGTTGTTCAAACTCTTAGAAATGTTGCTTGTGATGGAAGAACTGTTATATCTTCAATTCATCAACCTAGCAGTGAAGTTTTTGCACTATTTGATGACCTTTTCTTGCTTTCTGGTGGTGAAACTGTTTATTTTGGAGAAGCTAAATCTGCAGTAGAGTTTTTTGCTGAAGCTGGTTTTCCTTGTCCACGTAAAAGAAATCCTTCTGATCACTTCCTAAGGTGTATCAATTCTGATTTTGATATTGTAACAGCTACACTGAAAGGATCTCAAAGAATTCATGATGTTCCAAATTCATCAGACCCTTTCATGAATTTGGCTACAGCAGAGATTAAGGCAATGCTAGTTGAGAAATATAGAAGTTCAAATTATGCCAAAAGGGCAAAATCTAAGATTCAAGAACTATCTACCAAGGAAGGACTTGAAACTGAGGCACAGAATGGAAGCCAAGCTAGTTGGTGGAAGCAATTATCAACCTTAACAAAAAGATCAATGGTTAACATGTGTAGAGATGTTGGTTACTATTGGTTGAGGATCATAATCTACATCATTGTATCTATATGTGTTGGAACTATTTATTTTGATATTGGATATGGCTACACTTCAATTCTGGCTCGTGGTGCATGTGGTGCATTTATATCAGGATTCATGACATTCATGTCAATTGGAGGCTTTCCATCATTCATTGAAGAAATGAAGGTCTTTTATCGAGAAAGGCTTAATGGATATTATGGAGTTGCAGCATATATATTAGCCAACTTTCTTTCCTCTTTCCCATTCTTGATTGCTATTGCTCTTACTAGTAGCACTATTACTTATAACATGGTGAAATTCAGGCCAGGATTTATTCACTTTGTGTTTTTCACTCTCAACATCTTAAGCTGCATTTCAGTAATTGAGAGCCTCATGATGGTTGTGGCTTCACTTGTTCCAAATTTCCTAATGGGAATAATTACAGGGGCTGGATTAATTGGAATCATGATGATGACCTCTGGATTCTTCAGGTTGCTGTCTGATCTTCCGAAACCTGTTTGGCGCTACCCGATTTCGTATATCAGTTATGGCGCATGGGCAATCCAAGGTTCCTACAAGAATGATTTGCTTGGACTTGAGTTTGAACCTTTGATCCCTGGTGACCCAAAATTGAGTGGAGAATATGTGATCACACACATGTTGGGCATTGAATTAGACCATTCCAAGTGGTGGGACCTAGCAGCATTATTAATCATTCTCATATTTTACAGAATTCTGTTCTTTAGTATTCTCAAGTTCAAGGAGAGAGCATCCCCACTATTTAAGTCACTTTATGCAAAGAGAACCATACAACAGCTTGAAAAGAGACCTTCTTTCAGGATGGTGCCATCTTTCCCTTCACAAAGGCATCAACCCCTTCGTTCACTCTCTTCTCAAGAGGGTCTTGATTCTCCACTCAACTAG 2058 0.3844 MEIEATSGSKKESDEVIYGDLNKGSYLVWKDLRLVIPNFGKGPTKRLLNGINGYAEPGRITAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVLLNGKNQSLGYGFVAYVTQEDVLLGTLTVKETISYSANLRLPTTMTKEEVDNIVDGTIIEMGLQDCADRLIGNWHLRGISGGEKKRVSIALEILTRPSLLFLDEPTSGLDSASAFFVVQTLRNVACDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAVEFFAEAGFPCPRKRNPSDHFLRCINSDFDIVTATLKGSQRIHDVPNSSDPFMNLATAEIKAMLVEKYRSSNYAKRAKSKIQELSTKEGLETEAQNGSQASWWKQLSTLTKRSMVNMCRDVGYYWLRIIIYIIVSICVGTIYFDIGYGYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYILANFLSSFPFLIAIALTSSTITYNMVKFRPGFIHFVFFTLNILSCISVIESLMMVVASLVPNFLMGIITGAGLIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWAIQGSYKNDLLGLEFEPLIPGDPKLSGEYVITHMLGIELDHSKWWDLAALLIILIFYRILFFSILKFKERASPLFKSLYAKRTIQQLEKRPSFRMVPSFPSQRHQPLRSLSSQEGLDSPLN* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0106 685 SMART AAA_5 57 247 IPR003593 -
Lan13g0106 685 MobiDBLite consensus disorder prediction 662 685 - -
Lan13g0106 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 263 IPR027417 -
Lan13g0106 685 ProSitePatterns ABC transporters family signature. 171 185 IPR017871 GO:0005524
Lan13g0106 685 Pfam ABC-2 type transporter 228 304 IPR043926 GO:0140359
Lan13g0106 685 CDD ABCG_EPDR 24 253 - -
Lan13g0106 685 Gene3D - 25 265 IPR027417 -
Lan13g0106 685 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 271 IPR003439 GO:0005524
Lan13g0106 685 MobiDBLite consensus disorder prediction 660 685 - -
Lan13g0106 685 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 23 680 - -
Lan13g0106 685 Pfam ABC-2 type transporter 363 572 IPR013525 GO:0016020|GO:0140359
Lan13g0106 685 Pfam ABC transporter 48 199 IPR003439 GO:0005524
Lan13g0106 685 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 23 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0106 Lan-Chr13 620964 626339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0106 43 240 Calmodulin-binding Proteins AT2G36910 30.144 1.67e-13 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0055 7 267592 272497 Lan13g0106 13 620964 626339 LSH
Lan8g1889 8 25117306 25124304 Lan13g0106 13 620964 626339 LSH