Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0095 ATGGATCCTAGCAAAATGATGAGGCTTCAAACATATGCTGGTCTTAGTTTGATTACAACTATGGCTATTACATATCATGCATTTAATACTAGAGGCCAGTTTTATCCTGCAATGGTTTATCTAGCTACTTCTAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTAATCATGTGTGTTCTATGGCAGTTAACCAAAAAGCTTTTCCTCGGTTCCCTTCGAGAGGCTGAGATTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATCCTCTTTGCAATTACTATTTTTAGACAGGACTTTTCTGTTACATTTCTTGCAAAGGTCACGGCGCTGTTGTTAGTTAAGGCTTTGCATTGGTTGGCTCAGAAGAGACTCGAGTATATAGAGACCACTCCTTCTGTGACCAAGTTGTCTCATGTTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTTCTAGATAGCCTCTTTTTGTACAGTTCTGTGAAGCATTTGATCATAACTTGGCAGCCTTCAGTTTCACTTTTCTTTGCTTTTGAGTACATGATACTCGCAACAACTACAGTGTCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGATGGACAATGGGAAAAGAAACCAGTCTTCACCTTTTACCTCGAACTTATTAGGGACTTGCTTCACTTGTCTATGTACCTGTGCTTCTTTTTTGTAATTTTCATAAACTATGGAGTTCCTTTGCACTTAATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAATTCGAGTTGCGGATTACATTCGATATCGTAAGATTACTTCAAACATGAATGACCGATTTCCTGATGCCACGCCTGAAGAGCTTGACGTAGGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACTTCTGCTAAGAAGCTTATATGTGGTCATCTTTTTCATGTTCATTGTCTGCGGTCATGGCTGGAACGGCAACATACCTGTCCTACCTGCAGAGCACTGGTTGTACCACCTGAAAATGGGACAACGGCTGCCGGAGGACAGCAAAATTCACAGTCAGATGCTCATCAACATGGGGCAGGCACTGGAAGCACAACTCAAGCCGAACTTGGCAATGGGGTGGCAACTGCTAATTTTAGTCGGCATCAAGCGAGACTCCAAGCTGCTGCCGCAGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTGCAACTTCTTTAGCATGCTCCCGTGGATACACCCAATATCCCCCAGTTCAAAGATCGGTGGCTGAATCTTCAAGTGCCGAGGCATGCAGCAGTGAACAAACACAAAATCAGTTTGTTATCCCTGGTGGACCAATGAATGCATCTTTTCCTCCAATGGGAAACTTCAATTTTCTACCTTCCCAAACACACACAGCCCCTGTTAATTATGGAGAGGGGTTTGGAAATGTTCCGAATATGCCAAACTCTCTGGTGGAAGCTCAAAGAAAAGTTCTCCAATTACAGATCGAGATTCTGCAAAATCAGCTCCAACTTTTGCAGAAGACAAATGTTGGCAAGAGTGTACATGAAGGCACATCGGTATCGGATAGTAAAGGCAAGGGCATAGCTTCTTCATCTGTAGTATCTACCCATGATGAGATTCAAGACAGTAAAGCATAA 1659 0.4207 MDPSKMMRLQTYAGLSLITTMAITYHAFNTRGQFYPAMVYLATSKISLVLLLNMGLVIMCVLWQLTKKLFLGSLREAEIERLNEQSWREVMEILFAITIFRQDFSVTFLAKVTALLLVKALHWLAQKRLEYIETTPSVTKLSHVRIVSFMGFLLLLDSLFLYSSVKHLIITWQPSVSLFFAFEYMILATTTVSIFVKYIFYVSDMLMDGQWEKKPVFTFYLELIRDLLHLSMYLCFFFVIFINYGVPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEELDVGDATCIICREEMTSAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAGGQQNSQSDAHQHGAGTGSTTQAELGNGVATANFSRHQARLQAAAAAASIYEKSYVYPSATSLACSRGYTQYPPVQRSVAESSSAEACSSEQTQNQFVIPGGPMNASFPPMGNFNFLPSQTHTAPVNYGEGFGNVPNMPNSLVEAQRKVLQLQIEILQNQLQLLQKTNVGKSVHEGTSVSDSKGKGIASSSVVSTHDEIQDSKA* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0095 552 CDD RING-H2_synoviolin 294 335 - -
Lan13g0095 552 Pfam Ring finger domain 296 335 IPR001841 -
Lan13g0095 552 PANTHER RING ZINC FINGER PROTEIN 6 457 - -
Lan13g0095 552 ProSiteProfiles Zinc finger RING-type profile. 297 335 IPR001841 -
Lan13g0095 552 MobiDBLite consensus disorder prediction 345 371 - -
Lan13g0095 552 Coils Coil 488 515 - -
Lan13g0095 552 MobiDBLite consensus disorder prediction 344 371 - -
Lan13g0095 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 342 IPR013083 -
Lan13g0095 552 MobiDBLite consensus disorder prediction 521 552 - -
Lan13g0095 552 SMART ring_2 297 334 IPR001841 -
Lan13g0095 552 PANTHER - 6 457 - -
Lan13g0095 552 MobiDBLite consensus disorder prediction 521 545 - -
Lan13g0095 552 SUPERFAMILY RING/U-box 277 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0095 Lan-Chr13 556557 561513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0095 6 530 C3H Transcription Factor Family AT3G16090 64.083 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0095 K10601 - gmx:100816441 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0095 13 556557 561513 Lan13g0095 13 556557 561513 ECH