Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0093 ATGGGATCGCGGTCCCCGAAATCATGTGGAGAGGAAGAGGAGGAGGGTTTTGGAACCACGGTTTCGGGCCAATCAGGGTCAACTAGCAAAAGTGCTGGGTTGCCGTCTAGCCGGAGCGAGCAGGCATTGGTTGCAACTGCTGCTGATAGCAAGTTTCTCAGATTAAACCATATTGACTTGCATGGAGATGATGCTAGATCACAGGAAGCCGTTGTTAGCAAGAAGAAAAAGAGAGGTCAACGGGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGGCAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTTGCAGATGAACTTGTTGCTGAATTTTCTGATCCAAGCAATAGTGTTTTGCCCCCTGATCAGCAACAGTACGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTCAATGTTCTCATGGCAATGGATATCATTTCTAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACTAGTCTGAATGATGCTGATGAACTAAAGACAGAGCGTCTTGGACTCAGGAATAGAATTGAGAAGAAAGCTGCCTATCTTCAAGAGCTGGAGGATCAAAATGTAGGTCTTCAGAACCTTTTACAACGAAATGGGCAATTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTGCCTTTTATTCTTGTACAGACACGTCCTCACGCAACTGTTGAAGTTGAAATATCAGAAGATATGCAGCTTGTGCATCTTGATTTCAATAGTACTCCTTTTGAGCTGCATGACGACAACTATGTTCTTAAGGCAATGAAACTTTCTGAGAGACCACAGAATGATAACATGACACCCAATGATGGTGGTGAAAGTTCTAGCATGCCAAGCTTGTATCAATCACATGTTCCTCCTTCAGTTTCAAATCTTCCAATTAGGCCTCCCTCATCATCTCCACTCCCAGGAATATTAAAGGCAAGAGTTAAAAATGAGCATTAG 1014 0.4369 MGSRSPKSCGEEEEEGFGTTVSGQSGSTSKSAGLPSSRSEQALVATAADSKFLRLNHIDLHGDDARSQEAVVSKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNSVLPPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLNDADELKTERLGLRNRIEKKAAYLQELEDQNVGLQNLLQRNGQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHLDFNSTPFELHDDNYVLKAMKLSERPQNDNMTPNDGGESSSMPSLYQSHVPPSVSNLPIRPPSSSPLPGILKARVKNEH* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0093 337 MobiDBLite consensus disorder prediction 280 337 - -
Lan13g0093 337 MobiDBLite consensus disorder prediction 64 90 - -
Lan13g0093 337 PIRSF Txn_factor_DP 3 337 IPR015648 GO:0005667|GO:0051726
Lan13g0093 337 Gene3D - 82 175 IPR036388 -
Lan13g0093 337 Pfam E2F/DP family winged-helix DNA-binding domain 90 170 IPR003316 GO:0005667|GO:0006355
Lan13g0093 337 Coils Coil 186 213 - -
Lan13g0093 337 MobiDBLite consensus disorder prediction 18 41 - -
Lan13g0093 337 SMART E2F_TDP_2 87 170 IPR003316 GO:0005667|GO:0006355
Lan13g0093 337 PANTHER TRANSCRIPTION FACTOR DP 16 337 IPR015648 GO:0005667|GO:0051726
Lan13g0093 337 SUPERFAMILY "Winged helix" DNA-binding domain 90 171 IPR036390 -
Lan13g0093 337 SUPERFAMILY E2F-DP heterodimerization region 176 305 IPR037241 -
Lan13g0093 337 Gene3D Transcription factor DP 176 314 IPR038168 -
Lan13g0093 337 MobiDBLite consensus disorder prediction 283 312 - -
Lan13g0093 337 SMART DP_2 177 335 IPR014889 -
Lan13g0093 337 PANTHER TRANSCRIPTION FACTOR DP 16 337 - -
Lan13g0093 337 MobiDBLite consensus disorder prediction 1 41 - -
Lan13g0093 337 Pfam Transcription factor DP 178 308 IPR014889 -
Lan13g0093 337 CDD DP_DD 175 278 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0093 Lan-Chr13 541770 545923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0093 88 286 E2F-DP Transcription Factor Family AT5G02470 54.500 1.39e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan13g0093 DP 3.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0093 K04683 - qsu:112000390 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1905 8 25206581 25211042 Lan13g0093 13 541770 545923 LSH