Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0077 ATGGCTGAACGCAACGTAGTTTTGAAGAAAGAGGACCAAGAGGTACCACCTGAATATGGAAGGAAGTTTGTCAAACATTCTATAATTCAAAACACTGATATGAGAATCGAATCAGGGACTTGTAATGTGTGCGCAGCTCCTTGTTCATCTTGCATGCATCATAACCAAGCTCTCACGGGGTCAAAGGTTGAAGAATCCTCTGATGAAAACCATCACCTAGGAGAGGCTAGTCAGTATTCTATGGATGATGGTGATGGACCTTCTTCTTCTACCAGCAGACCCAGTAAAATTGCAAATGGTAGCCATCAAACAAATGCAGACAGAATAACTATATCTTATAGTTCAGCTTCCATTAGTCACTTAGGGGCAGAAGGATCTGGAAGTGGGCCATCTGTTGACTTGCCTGAGATTCTCTCTTCTAATAATGCAGATATCCTGGAAAACTTGTCGGAATGTTGTATAGAAAATGTTGATTCATCATTAACTAAAGAGAGAGCACCTATTATTGTTTCTGGTGAAGAATCTCTTGCAGATAAAGATAGCCCTGTTATTGGTACTGCCAAGGTTTCTTTGGACATACTTCCAAAGACAGAAGATACTGACAATGTTGTTAGGAAGGCTGAAGATGAATATCATAAATGTTCAGTCCATGATGGACTGCACGAGAAGGCTGGGGAGCTGGTTAAGTCACAAAGTGAGCCTGAGCCTCATTCGGAAGATGAGTCTGATACGACAAATAGTGTTGAAGATGGAAAAGCATGTGACATATGTGGAGATGCTGGTATCGAAGATAAACTTGTCATATGTAGTAATTGCAGCGATGGCGCAGAGCACATCTACTGTATGCGCCAAAAGCTTGAGAAGGTTCCTGAAGGGAACTGGTTGTGTGAAGAATGCAAATACGCAGAGGAGACTGAAAATCAAAGGCTGGATAATGAAGGAGAAAAACATCATAAAGATAGTTCAACTTCACAAATTTCTGGCAAAAGGTCTTCTGATAGAGTAGAAGTGGGTATAACTGCAAAAAGGCAAGCTCTTGAATCAAACATAGTATCACCAAAGGCATCAAGCCCCAAGAAAATGGTTTCACTGTCACGAGAATCTTCTTTCAAGAGCTTAGATAAGGGAAAGGTGGAACCTGGTCATCAAATCCCCATTCGTAACAATGCCAGTGGTGGTGACATAGAACTTGCTCGTTCTCTTTCTGCTGGTCCTCGGAATCAACCTACAAAAAGTACATTTTTGAAATCTAATTCATTCAACCTTACTTCCAAACCAAGAGTAAAACTTGTCAATGGAGTTGTTCCTCAAAAGCAGAAAGCGGGTGGTGAACATACTTCCAAGAATATGGAGGCACCTGCTTGGATTGTAAAAAAATCAACATCATCCATATCCTCAAATTTGCATCGTTCAACTTCTACAGAATCAAAAGTGAAAATGCTTTCTCCCAAGTCTGAAAGTTCTCAGGATTTGAAAGGATCGAGACTTGCAAAAAAATCAGGTGCATATGACAGGAAACTTCCGTCTAGGATTGGTCGGACTGTGGTTAGTTCAACTATGACTACTTCTGTTGGTCCCAACACTAAGGGTGAACAGAAGGTTACACCCTGTGGTGTAACTGCTAAACCTTCAGCAGTTAACAGCAATCAAGAGGTTAAGGTCAACCAAGATGTAAAATTAAGTTCATCATCAAAGTCTACGAGTAATATAAACCGTAAAAGTTTGGAAGCTCAAGTTATTTCAGAGAGAACATCAACCAGAGTCGATGAAACTCAACAGGATGGGATCTCTCATTCACAAGAGGCAACATGTAGTTCTAAAGAGGATATGCATAAAGGTAAAAGATTGAAAGCTGTAACCCAGGAGGAAGTTTGGCATAGAAGGCCTGAAATATACAAAAAGAAAGAAATGCCTGATCAAACTGATGTGTATCATACATCAGGTACAGACTGGAACTGTGAATTCACTTCTAGAGACCAAATGTTGGTTTCCAACACATTGAAGAACAGTAAATCTGCTGAAGAAACCAATGTGAAGCAGGAAATCCTTGAGAATTCCACATTTGAAACTTCCAAATGTTTGTCTGCCAACGGTTTGAGGCAACTTAACCTTTGTCCAACTGATTCCTGCTCTCAACTGGGAAAGCCAGATTCTTTTGGTTCTTCCTATGAAAAGCCTGTAGTGAGAGTCTTGCCTAATGAAGCTTGGGAAGTATCAAATGTTCTTTCGAAGATGTTTGCAATTCCAGAATATGAATATATCTGGCAGGGTGTCTTTGAAGTGCATAGAAGTGGAAAGCCACCTGACTTGTATGCTGGAATTCAAGCACATTTGTCAATATGTGCTTCCCCTAAGGTTCTTGAGGTAGTGAACAAGTTTCTACCGAAAGTTACCCTCACTGAAGTTTCCCGCTTGAGCTCATGGCCTTCACAATTTCATCAAGGCGGTGCTAAAGAAAATAACATTGCTCTTTACTTCTTTGCCAAAGACATTGACAGTTACGAGCATCATTACAAGGGTTTATTGGATCACATGATTAGAAATGATTTAGCACTTAAAGGAATCCTTGATGGTGTTGAATTTCTCATATTCCCGTCCAACCAGCTTCCTGAAAATTCACAGCGTTGGAATATGTTATATTTCTTATGGGGCGTATTTAAAGGGAGCAGGCGTAATCATTCAGATTCTGTAGAAAATATTTGTATTCCCAGTTTGAATGTGATGCCAATTGAGAAGGATTTTCCAGCTTCTGTTATGATTTTGTCCGAACCCTGCTGTTCGCCAAAGCGCATGGATGAAGAATCAATTGCTTGTGGTAAAGCATGCAGTGCACTTCGCCCGTCCACTTTCTTAGATGAAAGTCATATCATGGTAAGTAGGAATTTTGATACCGAAGGAATAGATGCTACAAGTAATATCAGTAAGAATAAATTATCAGAGAGAATAAACAATGATGAAGATCAAGGAAGGCCTAATAGGAAACGGCTAGAAGATGATCTCAACATTAACATGGAGGCAACATTTCAAGGAGACCTGACTGTAAAAGAAGTCAACTCTCAGCAACCTAATGATAAAAAAAATCAGCGTATAGATCTTTCAGATACGGTTATGCAGGCTCCTGTAGTTACTTGTCAGAGGATGCCTTGGAATGAGGTAAATGGCAAATTCGAAGGTGGTGAAAGTTCTAGCAAGAAGCTGAAAACAGATACAAGTGGAAGTTATGGATTTGGCAGTACTGGAAGCAGGGGCTCTTTTAATGACAGGTTTGCGTCACTTACAAATAATATTGGTCCCTGTTCTTCAGTTGAGGTCAAAGAATGCAAAGAAGTTTGTGATGAGAAAATCATTCATGAGGATTTTGGAACGACAGAAAGAGTCTTCTTTCCTATGAAAGAGTCTCATGAGTGCGACGAGGACCGCTTTCAAGTTGGGATTCCAAATTTAAATCTTGCTTTGGATGATGAATTGAAACCACCACATTCAGGTATGCTCCCTTTCTTTGTTGGGGCAGCAGTCAATAAAACTAGCCAGGAAAAACTTTCAGATGTAGTTGCAGATGAGCCGGTGGACAATGATAGTGTTGCTGCATCTCTTTCCCTGTCCCTAGCTTTCCCATCTCCACACAAGGAATACATCAAACCTCTTTCAAAAGCTGAGCATTTGTCTGATGGGCATCACCCGAACTCTTCCTTCCTCCTTTTTGGGAGATTCACAGAAAATAAATCATGTGCTATTTCCAGTCATGTACATTGTTATCTGGCACCTCTGATAAAGCTATAG 3780 0.4034 MAERNVVLKKEDQEVPPEYGRKFVKHSIIQNTDMRIESGTCNVCAAPCSSCMHHNQALTGSKVEESSDENHHLGEASQYSMDDGDGPSSSTSRPSKIANGSHQTNADRITISYSSASISHLGAEGSGSGPSVDLPEILSSNNADILENLSECCIENVDSSLTKERAPIIVSGEESLADKDSPVIGTAKVSLDILPKTEDTDNVVRKAEDEYHKCSVHDGLHEKAGELVKSQSEPEPHSEDESDTTNSVEDGKACDICGDAGIEDKLVICSNCSDGAEHIYCMRQKLEKVPEGNWLCEECKYAEETENQRLDNEGEKHHKDSSTSQISGKRSSDRVEVGITAKRQALESNIVSPKASSPKKMVSLSRESSFKSLDKGKVEPGHQIPIRNNASGGDIELARSLSAGPRNQPTKSTFLKSNSFNLTSKPRVKLVNGVVPQKQKAGGEHTSKNMEAPAWIVKKSTSSISSNLHRSTSTESKVKMLSPKSESSQDLKGSRLAKKSGAYDRKLPSRIGRTVVSSTMTTSVGPNTKGEQKVTPCGVTAKPSAVNSNQEVKVNQDVKLSSSSKSTSNINRKSLEAQVISERTSTRVDETQQDGISHSQEATCSSKEDMHKGKRLKAVTQEEVWHRRPEIYKKKEMPDQTDVYHTSGTDWNCEFTSRDQMLVSNTLKNSKSAEETNVKQEILENSTFETSKCLSANGLRQLNLCPTDSCSQLGKPDSFGSSYEKPVVRVLPNEAWEVSNVLSKMFAIPEYEYIWQGVFEVHRSGKPPDLYAGIQAHLSICASPKVLEVVNKFLPKVTLTEVSRLSSWPSQFHQGGAKENNIALYFFAKDIDSYEHHYKGLLDHMIRNDLALKGILDGVEFLIFPSNQLPENSQRWNMLYFLWGVFKGSRRNHSDSVENICIPSLNVMPIEKDFPASVMILSEPCCSPKRMDEESIACGKACSALRPSTFLDESHIMVSRNFDTEGIDATSNISKNKLSERINNDEDQGRPNRKRLEDDLNINMEATFQGDLTVKEVNSQQPNDKKNQRIDLSDTVMQAPVVTCQRMPWNEVNGKFEGGESSSKKLKTDTSGSYGFGSTGSRGSFNDRFASLTNNIGPCSSVEVKECKEVCDEKIIHEDFGTTERVFFPMKESHECDEDRFQVGIPNLNLALDDELKPPHSGMLPFFVGAAVNKTSQEKLSDVVADEPVDNDSVAASLSLSLAFPSPHKEYIKPLSKAEHLSDGHHPNSSFLLFGRFTENKSCAISSHVHCYLAPLIKL* 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0077 1259 MobiDBLite consensus disorder prediction 310 324 - -
Lan13g0077 1259 ProSiteProfiles Zinc finger PHD-type profile. 251 302 IPR019787 -
Lan13g0077 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 315 IPR013083 -
Lan13g0077 1259 PANTHER - 143 602 - -
Lan13g0077 1259 PANTHER - 996 1230 - -
Lan13g0077 1259 PANTHER - 599 983 - -
Lan13g0077 1259 PANTHER - 34 96 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 349 392 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 62 106 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 978 997 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 349 369 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 1053 1073 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 604 620 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 64 78 - -
Lan13g0077 1259 SMART PHD_3 253 300 IPR001965 -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 227 248 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 310 335 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 461 490 - -
Lan13g0077 1259 Pfam PHD-finger 254 300 IPR019787 -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 82 106 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 227 250 - -
Lan13g0077 1259 SUPERFAMILY FYVE/PHD zinc finger 243 304 IPR011011 -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 979 997 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 582 603 - -
Lan13g0077 1259 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 599 983 - -
Lan13g0077 1259 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 143 602 - -
Lan13g0077 1259 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 34 96 - -
Lan13g0077 1259 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 996 1230 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 582 620 - -
Lan13g0077 1259 MobiDBLite consensus disorder prediction 461 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0077 Lan-Chr13 441107 449072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0077 250 312 C2H2 Transcription Factor Family AT3G01460 31.746 1.27e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan13g0077 PHD 1.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0077 - - lang:109325547 2471.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0077 13 441107 449072 Lan13g0077 13 441107 449072 ECH