Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0057 ATGGAGAAATACCTGAGAGAAAACTTCAACGTACAGCACAAGCGACCTTCCGAGGCTGCTCTTCTTCGATGGAGATCCGCCGTCTCCGTCGTCAAGAATCCCCGTCGCCGCTTCCGCATGGTGGCCAATCTCGCACAACGCGCTGAGGCTGATAAAAAGCGTAGGAAGCTACAGGAAAAGATACGAGTGGCTCTCTATGTTCAGAAAGCAGCATTGCATTTTATTAACGCTAGGAGCCGTGGTGTTGGTGGTGGTGGTTACATGCTATCCAAAGAGGTTCAGGAAGCTGGTTTTGGAATTGAGCCAGATGAGTTAGGATCCATTGTTCGGTCCCATGACAGCAAATGTTTAGAAAATCATGGTGGAATTGATGGATTAGCAAGACATGTTTGTGTGTCACTGCAAGATGGTGTTAATTCTTGTGATGTTTCTCATAGACAGGATATCTATGGTGTTAACCGCTACGCGGAGAAGCCCTCTAGAAGTTTCTGGATGTTTGTTTGGGATGCAATGCAAGACTTAACTCTAATGATCCTTATGTTATGTGCTGTGATCTCAGCAGGTGTTGGAATTTCAACTGAGGGATTTCCAAAAGGTGTGTATGATGGATTTGGAATCATACTGTGTATTCTTTTAGTGGTCTTTGTCACTTCAATCAGTGACTATAAACAGTCTTTGCAATTTATGGATTTGGACAAAGAAAAGAAGAATGTTAGCATTCAAGTTACAAGAGATGGTAGAAGACAAAAGGTTTCAATTTATGATCTAGTGATAGGAGATACAGTTCATCTATCAATTGGAGATGTGGTTCCTGCAGATGGGTTATTCATATCAGGATTTAGCTTGTTAATTGATGAGTCAAGCCTATCAGGTGAGAGTGAGGCTGTGAATGTTGATCAACAAAATCCATTTCTTCTATGTGGGACCACAGTGCAAGATGGGTCTGCTAAGATGCTAGTAACTTCTGTTGGTATGAGGACTGAATGGGGAAGATTGATGGATACTCTGAATGAAGGTGGAGATGATGAGACACCTCTTCAGGTCAAACTAAATGGGGTTGCAACCATTATTGGAAAGATAGGCTTGGGTTTTGCCCTGCTCACGTTCCTGGTTCTGACTGGTAGGTTTTTGTTAGAGAAAATAGCTCACCATGACATCACTCACTGGTCTTTAAATGATGCATCTAAGCTTCTTGATTTCTTTGCTACTGCTGTTATTATAATAGTTGTGGCTGTTCCTGAGGGGTTACCTTTGGCTGTGACATTAAGTCTTGCATTTGCAATGAAGAAATTAATGAACGATAAGGCACTAGTCAGGCACCTCTCTGCATGTGAGACCATGGGTTCTGCTGGTTGTATTTGCACTGACAAAACTGGGACTTTGACAACAAATCACATGGTTGTAGACAAAATTTGGATTTGTGAACAAACTAAGGCAATAAAAAGCAGCGATGGTGAAAATGTGTTGAAGCCCTCAGTTTCTGAAGAGATATTTGATCTCCTTTTGCAGTCCATATTCCAGAATACTGGATCAGAGATAGTCAAAGGACAAGATGGAAAGAACAAAGTTATGGGTACTCCGACAGAGTCAGCACTACTGGAATTTGGAATGCTTTTAGGAGGTGATTCTAAGTCTTATAATGAGAAGTATAAGATAGTTAAAGTTGAACCTTTCAATTCAATCAGAAAAAAGATGTCTGTGCTTGTGGCTCTTCCTGATGGCACTGACAAGTTTAGAGGATTTTGCAAAGGAGCATCAGAAATAATTGTGGAAAAGTGTGACAAAGTTGTTAATGCAGAAGGCAAAGTCGACGAATTGAAAGAAGATCAAAGAAAGAGCATCATAGAAATTATCAATGGTTTTGCTTCTGAGGCTCTCAGGACACTCTGCATTGCCTTCAAGGACACTGAAGGATCTTCTGAAGGTAATAGTATTCCTGAGGATAAATACACATTGATTGCTATTATTGGGATCAAGGATCCAGTGAGGCCTGGAGTTAAAGAAGCTGTGAGGACTTGTCTAGCAGCTGGGATTACTGTTCGGATGGTAACTGGTGATAACATAAATACTGCTAAAGCAATAGCTAGAGAATGCGGCATCTTGACAGATGGAGTAGCTATAGAGGGACCAGAATTCCGGAATATGAATCAACAACAGATGGAGGAGATAATACCAAAAATACAGGTAATGGCTCGGTCCTTGCCTCTTGATAAGCACACCTTAGTGAAACATTTGAGGAATGATTTTGGTGAAGTGGTGGCAGTAACTGGTGATGGGACTAATGATGCTCCAGCTTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCAGGGACTGAGGTTGCAAAAGAAAATGCGGATGTGATTGTAATGGATGACAACTTCACAACCATAGTAAATGTTGCCAGATGGGGCCGTTCTGTTTATATTAATATACAAAAGTTCGTGCAGTTCCAGTTGACAGTTAATGTTGTTGCTCTCATGCTGAATTTTATTTCGGCATGTGTTTCAGGCTCTGCTCCTCTTTCCGCTGTTCAAATGCTTTGGGTGAACATGATCATGGACACTCTCGGCGCATTGGCACTTGCTACAGAACCTCCACATGAAGGGCTGATGAAAAGGCCACCTATTGGAAGGAACACCAAATTCATCACTGCGGTCATGTGGAGGAACATAGTTGGCCAAAGCCTATATCAAATTATTGTCCTTTTGATTCTCAAATTTCGTGGGAGACAGATTCTCAAGCTCAATGGACCAGATGCTAATTCTGTTCAGAATACTGTCATATTCAATGCTTTTGTGTTTTGCCAGGTATTCAACGAGATAAATAGCCGTGACATGGAGAAGATCAATGTTTTCAAAGGCATGTTCAACAGCTGGGTTTTCCTTATGGTCATGATCGCAACAATAGGCTTTCAAGCCATAATAGTTGAGTTTTTTGGTGCATTTGCTCAAACAGTGCCATTGAGCAAGGAGTTGTGGTTAACCAGTGTGTTGATTGGTGCAGCAAGTTTGATCATAGCTGTTATCCTAAAATGCATTCCTGTTCCTCTGACCAGTTATGTTGCCACTCATCATGATGGCTATGAACAACTTCCAACTGGACCAGAGCTTGCATGA 3123 0.4163 MEKYLRENFNVQHKRPSEAALLRWRSAVSVVKNPRRRFRMVANLAQRAEADKKRRKLQEKIRVALYVQKAALHFINARSRGVGGGGYMLSKEVQEAGFGIEPDELGSIVRSHDSKCLENHGGIDGLARHVCVSLQDGVNSCDVSHRQDIYGVNRYAEKPSRSFWMFVWDAMQDLTLMILMLCAVISAGVGISTEGFPKGVYDGFGIILCILLVVFVTSISDYKQSLQFMDLDKEKKNVSIQVTRDGRRQKVSIYDLVIGDTVHLSIGDVVPADGLFISGFSLLIDESSLSGESEAVNVDQQNPFLLCGTTVQDGSAKMLVTSVGMRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFALLTFLVLTGRFLLEKIAHHDITHWSLNDASKLLDFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKIWICEQTKAIKSSDGENVLKPSVSEEIFDLLLQSIFQNTGSEIVKGQDGKNKVMGTPTESALLEFGMLLGGDSKSYNEKYKIVKVEPFNSIRKKMSVLVALPDGTDKFRGFCKGASEIIVEKCDKVVNAEGKVDELKEDQRKSIIEIINGFASEALRTLCIAFKDTEGSSEGNSIPEDKYTLIAIIGIKDPVRPGVKEAVRTCLAAGITVRMVTGDNINTAKAIARECGILTDGVAIEGPEFRNMNQQQMEEIIPKIQVMARSLPLDKHTLVKHLRNDFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFTTIVNVARWGRSVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLSAVQMLWVNMIMDTLGALALATEPPHEGLMKRPPIGRNTKFITAVMWRNIVGQSLYQIIVLLILKFRGRQILKLNGPDANSVQNTVIFNAFVFCQVFNEINSRDMEKINVFKGMFNSWVFLMVMIATIGFQAIIVEFFGAFAQTVPLSKELWLTSVLIGAASLIIAVILKCIPVPLTSYVATHHDGYEQLPTGPELA* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0057 1040 Pfam haloacid dehalogenase-like hydrolase 452 770 - -
Lan13g0057 1040 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 666 IPR023299 GO:0000166
Lan13g0057 1040 Gene3D - 169 1015 - -
Lan13g0057 1040 Gene3D - 451 801 IPR023214 -
Lan13g0057 1040 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Lan13g0057 1040 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Lan13g0057 1040 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 114 1017 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lan13g0057 1040 SFLD Haloacid Dehalogenase 436 808 - -
Lan13g0057 1040 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1024 - -
Lan13g0057 1040 Pfam Cation transporting ATPase, C-terminus 841 1014 IPR006068 -
Lan13g0057 1040 Pfam Cation transporter/ATPase, N-terminus 120 186 IPR004014 -
Lan13g0057 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 839 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan13g0057 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 551 702 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan13g0057 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 206 518 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan13g0057 1040 SUPERFAMILY HAD-like 453 861 IPR036412 -
Lan13g0057 1040 Gene3D - 137 337 - -
Lan13g0057 1040 SFLD p-type atpase 436 808 IPR044492 -
Lan13g0057 1040 PRINTS H+-transporting ATPase (proton pump) signature 614 632 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan13g0057 1040 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan13g0057 1040 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan13g0057 1040 SUPERFAMILY Calcium ATPase, transduction domain A 239 335 IPR008250 -
Lan13g0057 1040 SMART Cation_ATPase_N_a_2 119 191 IPR004014 -
Lan13g0057 1040 Gene3D - 16 76 - -
Lan13g0057 1040 SUPERFAMILY Calcium ATPase, transmembrane domain M 121 1017 IPR023298 -
Lan13g0057 1040 Coils Coil 589 609 - -
Lan13g0057 1040 Gene3D - 464 661 IPR023299 GO:0000166
Lan13g0057 1040 CDD P-type_ATPase_Ca_PMCA-like 143 889 - -
Lan13g0057 1040 PANTHER CATION TRANSPORTING ATPASE 3 1024 - -
Lan13g0057 1040 Pfam E1-E2 ATPase 239 432 - -
Lan13g0057 1040 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Lan13g0057 1040 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Lan13g0057 1040 PRINTS P-type cation-transporting ATPase superfamily signature 654 665 - -
Lan13g0057 1040 PRINTS P-type cation-transporting ATPase superfamily signature 676 686 - -
Lan13g0057 1040 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Lan13g0057 1040 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0057 Lan-Chr13 311881 317278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0057 57 1037 Primary Pumps ATPases AT3G57330 68.941 0.0 1386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0057 K01537 - gmx:100801260 1744.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0023 7 120992 125999 Lan13g0057 13 311881 317278 LSH