Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0050 ATGGGTAGAGGAAAAATTGAGATAAAAAAGATTGAGAATGCTAATAGCAGACAAGTTACATTCTCAAAGAGAAGAAGTGGGTTGTTGAAGAAGGCGCATGAACTTGCTATTCTCTGTGATGCTGAGATTGCTGTTATCATTTTCTCAAATACTGGCAAACTCTTTGAGTTTTCAAGTTCTGTTATGAAGCGAACTCTTTCGAGATACAATGAATGCAATATTTCTTCGGATGCGACAGTAGTGGAATATAGAAAAGAGAAGGAGGAGTCTAAGATGGTGGAGATTCTTAAAGATGAAATCGAAAAGCTAGAAACAGAGCAATTACGGCTGTTGGGTAAGGACCTGACCGGATTGGGCATAGAGGAACTGAAACATCTAGAGCATCAACTTAATGAAGGTTTATTGGCTGTGAGAGAGAGGAAGGAGGAATTACTAATGCAGCAAATAGAGCAGTCTAGAATACAGGAACAGAGAGCTATGTTGGAGAATGAAACTTTGCGAAGACAGGTTGAGGAGATTCGTTGCCTGTTTCCATTGACAGAACGTGTAGTTCCATCTTTTCTTCCGTATCACCGGATGGAAAGAAAGAATGCCTTGGTAGATAATGGTGTTAAACGTCCCAACCTAGCTAGTAACTGCGCAAATGAGAAAGGAGATTCGGACATCACATTGCATTTAGGGTTGCCAAATGATGTCCATCAAAAGAGGAAAACACCTGAGAAAGAAACCATTTCTAATGATTCAGAGACTCAAATGGCTTTAGTCTGA 768 0.3997 MGRGKIEIKKIENANSRQVTFSKRRSGLLKKAHELAILCDAEIAVIIFSNTGKLFEFSSSVMKRTLSRYNECNISSDATVVEYRKEKEESKMVEILKDEIEKLETEQLRLLGKDLTGLGIEELKHLEHQLNEGLLAVRERKEELLMQQIEQSRIQEQRAMLENETLRRQVEEIRCLFPLTERVVPSFLPYHRMERKNALVDNGVKRPNLASNCANEKGDSDITLHLGLPNDVHQKRKTPEKETISNDSETQMALV* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0050 255 MobiDBLite consensus disorder prediction 229 255 - -
Lan13g0050 255 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan13g0050 255 MobiDBLite consensus disorder prediction 230 244 - -
Lan13g0050 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan13g0050 255 PANTHER MADS BOX PROTEIN 1 233 - -
Lan13g0050 255 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lan13g0050 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan13g0050 255 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan13g0050 255 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Lan13g0050 255 Coils Coil 86 113 - -
Lan13g0050 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan13g0050 255 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lan13g0050 255 Coils Coil 149 169 - -
Lan13g0050 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan13g0050 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan13g0050 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan13g0050 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan13g0050 255 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0050 Lan-Chr13 257664 261574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0050 1 250 MADS-box Gene Family AT5G13790 54.980 1.09e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan13g0050 K-box 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0050 - - rcu:8259342 351.288