Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0043 ATGAAGAGATTCAGATCGAACGAGGATCTTCACTCATACGCCGCTCATAACAAAGATTCCAATTCCAATTTCAACCGTACGTTTTCTTCTTCACCACATAGAACCACCTTCTACTACAAATCTGATAACGGACACACTTTTTCTTCATCATCGCGCAGAGATCGTGATCGTACTGTGGTCGAGGATCGAGAGGGTTCTAGGATTGTCCGGAAGCGATCGGAGTATGATTTGGACAATTTTGATCGGATTAGGTACAGGGACGGTGGTGGAGATAGGAGTATGATTCATAGGTCTGAGAGTTTCTGTGGATCTAGGAGGGAGGTTCCGAAGGGGTTTCGGTCAGAGAGGGACCGATCACGAACGGAAGGGAGTGTTTCCTCGTGGAGGAGAGGGTTGAAAGATTTTGATGAGAGAGGAGTGAGTAGCAGAACTATAATGGAAGATAGAGTTAATGCCAAGTCCCCAACTTGCTCCAGGGATTCTGAGAGTGATTATTCTAAGAACAGGTGTTCTTCTTCGCCATTAGGGTTGAGAAATGCAAAAGATTCAGAGGGTGACCAATCCGAGAAGAATAAGAAGATTGAGGAGTTGCAACCTAAGAGTGGAAGTAGCAGTGAAATGGAAGAAGGGGAGCTCCAACCCGAACCTGTGCCCGTTGAAGTTAGCCCTGGAATGGGAAGTCAAGAGCAGCATTCTGTTCCTTTGGAGACTGATGACACCGAAGTTCAAAATGAATGCCATGCTAATGTCGCTGATACTGCTATGGATCAAAGACATGAGCTGCTTTCGAGTGAAGAAGAGGTAAAACCTATTGGGAGTTTTGATTCAGAGATGAAAGATGCAGAAAAGGAAGCTGATAAGGTGGTTCCAGATATTCAAGATGATCCAACTGAAAAGTTGATTGTTACTCACAAGGAAAATGACACTGTTACTGAGTGTTTGAAGGATAACAAGAAAGATGAACTTTTGAAGGTTGTTATTGAGTGCAAGGAGGAAAGAAAGAAGGGTGCAGATATGGAGGTTGTGTTGTCTAACGAAGAGGAGGAGCATCATAAGCAGGAGAAGGGTGTGGAACTAGAAACCAGCTCAGCTATTGACAAACCTCAGTTAAAAGATGAAGTCTCAATAGAAAATGAAGCTGCTAAAGAAGAAAATAGAGAAATAATGATGGAGACAGTGGCCAACAACAATGCCAGGGATAAAGGCAAAAGCATCTCTGTTACACCTACCGATGTTGCTCATTCTGCAGAAGATGGCTTATGGATTGACAGAGGACCGAGAGACCTCACAACATGTGCTGCTGATGTTATGGAATTTCCAAGCACAAGAGGTTTCGAGTTGTTTTCAAGATCTTCCATTAGAAAAGTCGAGAAAACGGAGCACTCGGTTCTCAACAAGCAAATGGATGAGAGTCTTGGAATGGAGCAGCTTGATCTTTCTCTTAGTTTGCCAAATGTTCTGTTACCCAATGGTGCTCACGAGACTACAACAATAGTACAAGTCCCTGGATCTCCGAGACAAGCACGGAGTGTGCAGTCTTTAAGTAATACGTTTTGTACTAACTCTGATGGTTTTACTGCATCCATGTCCTTTTCAGGTTCCCAGTCACTCTATCACAACCCTAGCTGTTCTCTAACGAAAAATTCATTGGACTTTGAAAATTCTGTTGGCAGTCGCCCCTTATTCCAGGGAATAGATTGGCAAGCCCTGTCTCAAGGTGATCCCAAAGAAAAAGAAGTTCACTTTTCTCAGAGAGCTTCAATGAACGGAAATGGCTCTTTTCACCAGTCTCAACCATCATGGGGTATTTTAGATGGTCAAGCTGTTAAAGCCCAACAACCTAGGGTTATAGAAGGGAGCTCAAAAATGATTAATGGACTTGAGAAGCAATTCAGTTTTCATAAGCAGCTTTCAGGACAACCAAGATGTCATGATGATGTTAGATCTCCTTCGCAGAGTTTTGGATCTCACGACACTGGATCCAATTATAGTTTTGAGAAAAAGAGGGATGTTGGGGACAGGAATAGTGGTGGGTTGTATCGAACTACTAGCCAGAAGGAACAGGAACATGTACTGAGTGGTGGAGTTGATTTTGTTGAGACAATCATTGCGAAAATAGTTTCCGAACCTGTGCACGTAATGTCCAGAAAGTTCCATGAAATGACTGGACAGTCTGCAGCATGTCTAAAAGAGGGCATTCACGAACTCATGGCGAATGCTGATAAGCATGGGCAGATGCTTGCTTTTCAGAAAGTTCTGCAGAACCGGTCTGATATAACCTTGGAGGTCCTACTGAATTGCCACCGAGTGCAGCTAGAAATCTTTGTTGCTTTAAAAACTGGTTTAACTCATTATCTTCACATAGACAACAGCATTTCATCTTCAGCGTTAGCTCAAACTTTTCTCAACCAAAGATGTAGGAATCTCTCATGTCGAAGTCAGTTGCCTGTGGATGAATGTGATTGCAAGGTTTGTGTGTGGAAGAATGGTTTTTGCAGGGAATGCATGTGTCTTGTGTGTTCCAAGTTTGACAATGCATCAAATACATGTAGTTGGGTAGGGTGTGATGTTTGCCTTCACTGGTGCCATACCGATTGTGGATTGCGGGAATCTTATATTAGGAATGGACACAGTACTACTGGGACAAAAGGGACAACAGAGATGCAGTTTCATTGTATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCAAAAGGCTGGTCAGTTGAAACTCTTCACAAGGAGCTGGAATATGTGAAGAGAATTTTTTCTTCCAGCAAAGATACGAGAGGGAGGCAGCTGCATGAGATTGCGGGTCAAATGCTGCCAATGTTGGCAAATAAGTCTAACCTCCTTGAGGTTTTAAGGCATATCATGTCTTTCCTTTCCAATGGTGGTGATTCTTCCAAACTAGCCATGACAGCAAGTTTTTCTGGGAAGGAACAAGTTAAAGAAAACAATGGAGTAGCTGGGCTGAAATCACGTTATCAAGAAAAGCCACCTTTGTTAGAAAGGCCACCTTTGTTAGAAAGGCCACAGCCACCAAGCATCCTTCATAGCTTTCACCAGAGTGATAAAAGGTCTCTGGTGCAAGAGGTGCAGATGAGTAGTGTCCAAAAGGACTTCGGTTTTGATGAACTGGAGAGCTTAGTCAAAATTAAACAAGCAGAAGCTAAAATGTTTCAAGCACGTGCAGATGATGCAAGAAGAGAAGCTGAAGGGTTGAAACGCATTTCAATCGCAAAGAATGAGAAACTTGAAGAAGAGTATGCTAATCAAATCACCAAGTTGCGATTGGTTGAGACTGAGGAATTGCGTAAACAAAAATTTGAAGAACTCCAAGCATTAGAGAGGGCACATCTGGAATATTTCACCATGAAAATGAGAATGGAGGCAGACATTAAAGATCTTATATCCAAAATGGAAGCTACTAAAAGAAGCCTTGCTGTGTGA 3480 0.4267 MKRFRSNEDLHSYAAHNKDSNSNFNRTFSSSPHRTTFYYKSDNGHTFSSSSRRDRDRTVVEDREGSRIVRKRSEYDLDNFDRIRYRDGGGDRSMIHRSESFCGSRREVPKGFRSERDRSRTEGSVSSWRRGLKDFDERGVSSRTIMEDRVNAKSPTCSRDSESDYSKNRCSSSPLGLRNAKDSEGDQSEKNKKIEELQPKSGSSSEMEEGELQPEPVPVEVSPGMGSQEQHSVPLETDDTEVQNECHANVADTAMDQRHELLSSEEEVKPIGSFDSEMKDAEKEADKVVPDIQDDPTEKLIVTHKENDTVTECLKDNKKDELLKVVIECKEERKKGADMEVVLSNEEEEHHKQEKGVELETSSAIDKPQLKDEVSIENEAAKEENREIMMETVANNNARDKGKSISVTPTDVAHSAEDGLWIDRGPRDLTTCAADVMEFPSTRGFELFSRSSIRKVEKTEHSVLNKQMDESLGMEQLDLSLSLPNVLLPNGAHETTTIVQVPGSPRQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSLDFENSVGSRPLFQGIDWQALSQGDPKEKEVHFSQRASMNGNGSFHQSQPSWGILDGQAVKAQQPRVIEGSSKMINGLEKQFSFHKQLSGQPRCHDDVRSPSQSFGSHDTGSNYSFEKKRDVGDRNSGGLYRTTSQKEQEHVLSGGVDFVETIIAKIVSEPVHVMSRKFHEMTGQSAACLKEGIHELMANADKHGQMLAFQKVLQNRSDITLEVLLNCHRVQLEIFVALKTGLTHYLHIDNSISSSALAQTFLNQRCRNLSCRSQLPVDECDCKVCVWKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKGWSVETLHKELEYVKRIFSSSKDTRGRQLHEIAGQMLPMLANKSNLLEVLRHIMSFLSNGGDSSKLAMTASFSGKEQVKENNGVAGLKSRYQEKPPLLERPPLLERPQPPSILHSFHQSDKRSLVQEVQMSSVQKDFGFDELESLVKIKQAEAKMFQARADDARREAEGLKRISIAKNEKLEEEYANQITKLRLVETEELRKQKFEELQALERAHLEYFTMKMRMEADIKDLISKMEATKRSLAV* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0043 1159 MobiDBLite consensus disorder prediction 47 65 - -
Lan13g0043 1159 Coils Coil 371 391 - -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 1 15 - -
Lan13g0043 1159 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 717 739 IPR004082 -
Lan13g0043 1159 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 756 771 IPR004082 -
Lan13g0043 1159 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 771 786 IPR004082 -
Lan13g0043 1159 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 797 818 IPR004082 -
Lan13g0043 1159 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 843 863 IPR004082 -
Lan13g0043 1159 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 916 935 IPR004082 -
Lan13g0043 1159 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1054 1074 IPR004082 -
Lan13g0043 1159 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1093 1115 IPR004082 -
Lan13g0043 1159 CDD PHD_OBE1_like 836 895 - -
Lan13g0043 1159 Pfam PHD - plant homeodomain finger protein 806 929 IPR032881 -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 1 65 - -
Lan13g0043 1159 Coils Coil 1060 1128 - -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 261 303 - -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 102 128 - -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 146 241 - -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 645 661 - -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 638 686 - -
Lan13g0043 1159 Pfam Coiled-coil region of Oberon 1033 1146 IPR032535 -
Lan13g0043 1159 PANTHER PROTEIN OBERON 4 1 1158 - -
Lan13g0043 1159 Coils Coil 1136 1156 - -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 16 46 - -
Lan13g0043 1159 MobiDBLite consensus disorder prediction 182 199 - -
Lan13g0043 1159 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1158 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0043 Lan-Chr13 225707 229851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0043 806 1000 PHD Gene Family AT5G57380 26.000 1.51e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0043 - - gmx:100817003 1440.63