Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0029 ATGGATTCAAACCCTAATCCCGATTCTCATCTCGATCCATCGGAAACACCAAACACAAACGGCACTTCCGATAACAACAACATCAACAACGACGACGATTCCCACCTTATTCCAAAACCATTGCTCCCCGACAACGCCGCCCTCGCCCCCGACAAGGACCAATCCGGCGGAGAGGAGGATGCCACTAGCAAGCGCCGCCGTCGAAAGAGCCGCTGGGACCCACAGCCAGATTCAAACGACCAAAACGGCTCCGAGTCCGGAACCAAGAAGAGGAAGTCGCGGTGGGCGGAGGAACCAACGCCGGCGGCATCAATTAACCTCGGCGATCTCATGGGATTGGGAGGTATCGAATTAGATAGCGAGATTCCTGTTTTGAATTCTAGGCTTTTAGAGATTAGTAGAATGTTGCAATCTGGTTTGCCATTAGATGATCGCCCCGAAGGTGCTCGATCCCCTTCGCCTGAGCCAATTTATGATAACATGGGCGTTAGGATTAATACCCGTGAATATCGCGCTCGTGAGAACTTGCAAAAGCAGAGGCAAGAAATCATATCCACTATTATAAAGAAAAACCCTGCTTTTAAGCCTCCTGCAGATTATAGGCCACCCAAGCTTTATAAAAAGCTTTATATTCCGATGAAGGAGTACCCTGGTTATAATTTCATTGGGCTTATTATTGGGCCGAGGGGGAACACACAGAAGCGTATGGAGAAGGAAACTGGTGCCAAGATTGTGATCCGGGGTAAAGGTTCGGTCAAAGAAGGTAGGTTGCAACAGAAGAGGGATTATAAGCCTGATCTGTCTGAGAATGAGGATTTGCATGTTTTGGTGGAGGCAGAGACACAGGAGTCACTAGAAGCTGCTGCTGGTATGGTGGAGAAGCTGTTGCAGCCGGTGGATGAGGTGTTGAATGAGCATAAGAGGCAGCAGCTTAAGGAGCTTGCTGCGTTGAATGGGACAATTAGGGATGAAGAGTTTTGCAGGTTGTGTGGTGAGCCTGGTCATCGTCAGTATGCATGTCCTACTAGGAATTCGACATTCAAGAGTGAGGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCAAGTATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCGGAGTTGGGTGGTTCAGTTCCTGAATCTGCAACGACACAAACCAATGTGTTGGCAATTGGTTCTGGAAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTTCGGATCAAGTGGTGGCACACAACATGCTGGATTAGGGTTTAATCCAGCTAAAAAGGAAATAGATGATACAAACTTGTACATCGGGTATTTGCCACCTACCCTTGAGGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTGATGGCGAAAGTTATAAAGGACCGAATGACTGGTTTAAGTAAAGGATATGGATTTGTCAAGTATGCTGATGTTCAAATGGCAAACACTGCAATTGCGGCCATGAATGGTCATCACCTTGAGGGTCGGACGATTGCTGTTAGAGTTGCCGGTAAGCCTCCTCAGCCAGTTGTACCTCCTGGGCCACCAGCATCTTCGGCGCCAAGTTATCCTGTTCCAACCCAACCACATGGTGCCTATCCATCCCAACAATATACTGCCGGTGGTCCCCTTGGGAGTGCACCCCCAGGGAGTTATGGTGGTACCCCCGTTCCATGGGGACCTCCTGTCCCTCCTCCATATACACATTATCCTCCTCCCCCACCAGGGTCAACTATGTACCCTCCTATGCAAGGTCACCCTATGCCTCCTTATGGAGCTCAATATCCACCTCCACCTGGTGCCCCGCCACAGCCCTCCACAACTTCTAGTGAAATGCAGCAGAGTTACCCTCCTGGAGTTCAGTCTGATAATAGTACCTCCTCCACTCAGCCTGTACCACCCAATATATATGGGAACTCAATACATTCGATGCCACCACCAGCCCAACTTACATATCCTGCATCATATGGCTATCCACCTTACTACAGTGCAATTCCTCCACCACCCGCGGTTCCTGTCTCGACTCCAGACCAATCCCACAACATGGCTAACGTGCCATGGGCCAGTAATCCTCCAGTGCCACCACCTCCTGCTTCATCTGCAGAGAATCAATCCCAGGGCATTGGAAATGTGCCTTGGGCCACAAATCCACCAGTGCCTCCTCCTGCTTCATCAGCGGAGAAAACATCATATGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2283 0.4919 MDSNPNPDSHLDPSETPNTNGTSDNNNINNDDDSHLIPKPLLPDNAALAPDKDQSGGEEDATSKRRRRKSRWDPQPDSNDQNGSESGTKKRKSRWAEEPTPAASINLGDLMGLGGIELDSEIPVLNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGVRINTREYRARENLQKQRQEIISTIIKKNPAFKPPADYRPPKLYKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDYKPDLSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLKELAALNGTIRDEEFCRLCGEPGHRQYACPTRNSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATTQTNVLAIGSGNSGSNPPWANNFGSSGGTQHAGLGFNPAKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADVQMANTAIAAMNGHHLEGRTIAVRVAGKPPQPVVPPGPPASSAPSYPVPTQPHGAYPSQQYTAGGPLGSAPPGSYGGTPVPWGPPVPPPYTHYPPPPPGSTMYPPMQGHPMPPYGAQYPPPPGAPPQPSTTSSEMQQSYPPGVQSDNSTSSTQPVPPNIYGNSIHSMPPPAQLTYPASYGYPPYYSAIPPPPAVPVSTPDQSHNMANVPWASNPPVPPPPASSAENQSQGIGNVPWATNPPVPPPASSAEKTSYGADSEYEKFMAEMK* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0029 760 SMART c2hcfinal6 352 368 IPR001878 GO:0003676|GO:0008270
Lan13g0029 760 SMART c2hcfinal6 326 342 IPR001878 GO:0003676|GO:0008270
Lan13g0029 760 MobiDBLite consensus disorder prediction 1 101 - -
Lan13g0029 760 MobiDBLite consensus disorder prediction 1 33 - -
Lan13g0029 760 MobiDBLite consensus disorder prediction 687 749 - -
Lan13g0029 760 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 34 706 - -
Lan13g0029 760 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 706 760 - -
Lan13g0029 760 MobiDBLite consensus disorder prediction 621 657 - -
Lan13g0029 760 Coils Coil 752 760 - -
Lan13g0029 760 MobiDBLite consensus disorder prediction 592 657 - -
Lan13g0029 760 ProSiteProfiles Zinc finger CCHC-type profile. 327 341 IPR001878 GO:0003676|GO:0008270
Lan13g0029 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 444 513 IPR000504 GO:0003723
Lan13g0029 760 MobiDBLite consensus disorder prediction 521 538 - -
Lan13g0029 760 Gene3D K Homology domain, type 1 197 325 IPR036612 GO:0003723
Lan13g0029 760 PANTHER RNA-BINDING PROTEIN RELATED 34 706 IPR045071 -
Lan13g0029 760 PANTHER RNA-BINDING PROTEIN RELATED 706 760 IPR045071 -
Lan13g0029 760 CDD SF1_like-KH 207 322 - -
Lan13g0029 760 ProSiteProfiles Type-1 KH domain profile. 220 292 - -
Lan13g0029 760 ProSiteProfiles Zinc finger CCHC-type profile. 353 367 IPR001878 GO:0003676|GO:0008270
Lan13g0029 760 MobiDBLite consensus disorder prediction 139 160 - -
Lan13g0029 760 Gene3D - 423 524 IPR012677 -
Lan13g0029 760 MobiDBLite consensus disorder prediction 592 620 - -
Lan13g0029 760 Pfam Splicing factor 1 helix-hairpin domain 91 201 IPR032570 -
Lan13g0029 760 Pfam KH domain 220 292 IPR004088 GO:0003723
Lan13g0029 760 SMART kh_6 205 297 IPR004087 GO:0003676
Lan13g0029 760 MobiDBLite consensus disorder prediction 53 75 - -
Lan13g0029 760 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 205 331 IPR036612 GO:0003723
Lan13g0029 760 SUPERFAMILY Retrovirus zinc finger-like domains 323 369 IPR036875 GO:0003676|GO:0008270
Lan13g0029 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 442 520 IPR000504 GO:0003723
Lan13g0029 760 SMART rrm1_1 443 516 IPR000504 GO:0003723
Lan13g0029 760 Gene3D - 326 378 - -
Lan13g0029 760 Gene3D - 118 196 - -
Lan13g0029 760 MobiDBLite consensus disorder prediction 519 572 - -
Lan13g0029 760 SUPERFAMILY RNA-binding domain, RBD 434 533 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0029 Lan-Chr13 140428 144970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0029 442 573 Eukaryotic Initiation Factors Gene Family AT3G16380 33.094 5.75e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0029 K13095 - gmx:100800982 995.727