Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0018 ATGACTCCAACTAATATGGCAGGGCAGTTTGGTGACACAACATACACCAAAGTGTTTGTTGGAGGGTTGGCTTGGGAAACTCAAAAGGAAACTATGAACAACTATTTTCAGCAATTTGGTCACATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGCGAAGCAGATGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTTATTGATGGCCGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTACAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGTGAGGAACTTTAGTGTAATGGGTTCTTTCCAGACAGGGTTCGGAGGAGGTGGTTTGGGGTCAGCTTTTGCTTCAGCAGCAACCTTCCCTCCTTATGCCATCCAGCAAGGGATACCTTATAATCTTTTTGGGTATTCTTCTTACTTGCCGGATTACGCTTACCCCGCGAGCTATTATAGTGTGTATGGAGCAGGAGCAGCAGCACAGTACCCAGTTTATGGAAGTGGAGGAATGATGAGCGGCGGCGGCGGCGGCGGTGGTGGTAGTGGTGGTGGTGCAGCATTCTACCCATACGTGCAGTACGGTGGAGGAGAAGGAACTGGTTATAGTTCAGTGGGGCAGGGTGGTTATGGTGCTGTGAACTATCCACCACACATATTTCAGTATTCTCCAATTGCTGCTGCTTCAACTGCTGGCCATAGTAGTTATGCTCAACACTGTGCAACACCCATCTCTCTTGCACCTTCCCCTGCCGCCATACAATCAGGCGTGACAATGGCTCTTCAATCTCCAATCCATCTTCGCTAG 852 0.4894 MTPTNMAGQFGDTTYTKVFVGGLAWETQKETMNNYFQQFGHILEAVVITDKATGRSKGYGFVTFREADAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGVRNFSVMGSFQTGFGGGGLGSAFASAATFPPYAIQQGIPYNLFGYSSYLPDYAYPASYYSVYGAGAAAQYPVYGSGGMMSGGGGGGGGSGGGAAFYPYVQYGGGEGTGYSSVGQGGYGAVNYPPHIFQYSPIAAASTAGHSSYAQHCATPISLAPSPAAIQSGVTMALQSPIHLR* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0018 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lan13g0018 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Lan13g0018 283 PANTHER OS01G0876800 PROTEIN 1 278 - -
Lan13g0018 283 PANTHER BOULE-RELATED 1 278 IPR037366 GO:0003729
Lan13g0018 283 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lan13g0018 283 Gene3D - 10 97 IPR012677 -
Lan13g0018 283 SUPERFAMILY RNA-binding domain, RBD 15 112 IPR035979 GO:0003676
Lan13g0018 283 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0018 Lan-Chr13 96561 101930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0018 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 5.19e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0018 - - adu:107477578 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1950 8 25448272 25454061 Lan13g0018 13 96561 101930 LSH