Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0016 ATGGCCCAGCAGTCATCTAGGCTTCAGCGGTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACACGGTTGACTGCTGCTCGTCAGATAGGGGACATTACAAAATCACACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTGGCAGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATTAATTTGACAGAACTTCTTGCTTCTGTTGTATCAAAAATGTCTGAGGATGGTATATCTTGCAGCGTCGAGGATCTGTGTGCATGGCCTTATGTACAATCAAAGATCAATGGAAGCTCATTTAGAAGCAGCTTTGATATCAACAAGGTGCTTGAATTTGGAGCTTTATTAGCATCGGGAGGACAGGAATATGATATCGGTAGTGATAATATAAAGAGCCCAAAGGAGCGATTAGTTCGCCAGAAACAAAATCTTCGACGTCGTTTAGGTTTGGATGTATGCGAACAATTTATGGATATCAGCGATGTAATAAGAGATGAAGATCTTATGGCACACAAATCAGTCTCACATCTCAATGGTAGCCATAGAGCATTTGCATCTTATTCTGTACATAATAACATCCAGAAAATGGTTGCAAATATGGTTCCTACTGTGAAATCAAAGTGGCCAAGTGCACGAGAACGGAATCTTTTAAAACGTAAAGCAAAAATAAACTCAAAGGACCAAACTAAAAGTTGGTGCGAAGATGGAAGTACTGAGGCATCAGGTACTCCGAATTTGACTACTAAAGGCACATGTCCCGACTCAGTGAATTACAGTAAGGCGTTCATAGATGTTAATCATGATGAAGATGGCTTTGAGCATGATGAGAATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATCATTGATATGTTTGATCCTGTATGGGAGGTACGACATGGTAGCGTGATGGCACTGAGAGAGATTTTAACACATCAAGGCGCTTCTGCTGGGGTCTTTAAACACAACTCTCGCTTAGATGGGGCTTTCTTTGGTGAGTTAGAAGACAAAAGTATAACAAATATGCCAAAGAGAGAGAGGGAGATTGATTTAAACATGCAAGTTTCAGTGGATGAGTTTGAGTCAAGCTTGAAGAGGCCAAAACTTGAAGATGTATCATCATCAACCTCTATGGATAGCGTGATGACTTGCAGCAATGAATGCGATATTGACCTCAGCATTAGTTCTGAAGCTTACGGATGCAATTTACCTTTGGATTATGGGAATGGGCAATTTAATGGTAATTCTGTGGATGTGGATCTGGAATCTTTCTCTGACGGCTTACATGATGCATTCAAGGAACCTGCTAATTTCGCAGAGCAGAAGGGTTATTCTGATGACAATAAGATTCCCTCTGGAAATCTTCATGTGCTGAAAAATCTTCCTCAGAATTGTGAGCTTATGAATTTGGTTAAAGTGGCTAGAAGCTCCTGGCTTCAGAACTGTGGATTTCTTCAAGATTGTGTGATACGCTTTCTGTGTGTGCTGTCACTAGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCTGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCGGCACTAGTAAATGAAACATTGAACATATTGCTGATAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGCAGCCTTCTGGGTATCAAATATTTAGTTGCTGTGCGGCAGGAGATGCTTCATGATTTGCTTGGACGTGTTCTTCCTGCATGCAAATCTGGTTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCATCTGCAGCTGCAATTGTTTCTTTGCAGGGTCAAACATTGGACTCAATTGTCATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATCTGCTAGCAGAAATCTATTCTCAAGAAGAGATGGTCCCGAAGATGTATGAAGTTTTTAAATTAGGAGACAGTGAAATGGCTGATCAAAATGGAGTTGGTGTTGGTTGTGAGAATGGAGAAGAAAACCCTTTTATTCTTTCAACGTTGGCGCCACGTTTGTGGCCATTTATGAGGCATAGTATCACGTCAGTCCGTTATTCAGCAATACGAACTCTGGAGAGGCTACTTGAAGCTGGACATAAGAGAAGCATGTCTGAGCAGGCTAGTGCTTCATTTTGGCCTTCTTGTATATTCGGAGATACCCTTAGAATTGTCTTTCAGAATCTGTTGTTGGAAACAAATGAGGGTATTTTGCAATGTTCTGAGAGAGTTTGGAGCCTCCTTGTTCTGTGTTCTGTGGAGGACTTGGATACTGCTGCGAAGTCTTACATGGCTCCTTGGATAGAACTTACATCAACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCAGCGAGGATTGAAAATGAAAGTGGTGGAGATCTTGGCCTTGATTCTACAAAAGGATCTATTCCACAAGATAGAAATGGAGATGTTGCTATAAGTTCTGCTAAGATAGTTGTTGGTGCTGATATGGACACATCTGTAACTCATACTCGGGTGGTTACAGCAACTGCATTGGGAATTTTTGCTTCTAAGCTGCCAGAGGATTCTGTAAAATTTGTGATTGATCCATTGTGGAGGTCTCTAACCGCTTTGTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATATCTTGGTTCAAGGAGGTAAAGAGCAGGAATTCATCCGAAAACCTTAATGGTATTCCTGGTGCCCTCAAAGATTGGTTGCTGGACTTATTAGGATGTACTGACCCAGCATTCCCTACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCAAGAACTTATTCAAAAATGCGTAGTGAGGCTGGCCAACTGCTAAATGCTGTCAAGTCTTCTGGTTTGTTTAATGAGTTATTGTCGACTACCAAAATTGATTTGAATAGCTTGAGTGTGGATGATGCCATTAGTTTTGCATCAAAAGTTCCGGCCTTGTCCAATGATAGTTCTGTGAACGAACCCCTGGAAAAGAATACTGTGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATATTACGGTCTCGTCAGCAGTTGCAGCAGCAGTTGTCTGGATGTCTGAGTTTCCTACACGACTCACCCCAATCATTTTGCCTTTGATGGCTTCAATCAAACGAGAGCAGGAGGAAATACTGCAAATGAAATCAGCTGAGGCACTTGCTGAGCTAATGTATCACTGTGTCGCACGTAGGCCTTGCCCCAATGATAAATTAATAAAGAATATATGCAGTTTGACATGCATGGATCCCTCTGAGACTCCTCAAGCTAAATCCATTTCCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTGGAACTCCCATGAGCAAGCAGAAGTCAAAAGTCCATGTGCTTGCTGGTGAAGATCGAACAAAGGTAGAAGGATTTATAAGTAGACGTGGGTCTGAACTATCATTGAGGCTTCTGTGTGAGAAGTTTGGTCCTTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTAACTGAGGTGCTTAAGCCATGTTCCTCCGAGTCTCAAGCTGTTACTAATGAAAATCAAGTTTCTGTGACGATAGAATCTGTTAGTGATCCCCAGACCTTGATTAACAATATCCAGGTGGTACGATCTATTGCTCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCAATGCATTTTCAAATGTGTTCAGCATTCTCATGTTGCAGTTAGATTAGCCGCTGCACGCTGCATTACGTCCATGGCTAGGTCAATGACCGTAAAAGTTATGGGAGCTGTGATTGAAAATGCTATCCCTATGTTGGAAGATGCATCATCAGTTCATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGACTAGGTGTAGAGTTGGTCTCTTATGCTCCTCTATTGGTGGTTCCACTTCTAAGGTGTATGAGTGATTGTGATCGGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCATTACTGCCTTTAGCTCGAGGCCTTCCTCAACCAATTGGATTAGGGGAGGGCATATCTAGAAATGCAGAAGATCTGCATTTTCTGGAGCAGCTACTTGACAATTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACACTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTCTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCAGATATCGCTGAGCACCGAACTTCAATTGGGAATGAAGATCTTCTGCCATCATTAATTATTTGCCCATCAACACTAGTTGGGCATTGGGCCTTTGAGATAGAAAAGTATATTGATGCTTCGGTTATATCTAGTCTTCAATATGTCGGTTCTGCTCAGGAGCGAGTGTTTCTTCGAGATCATTTTTGCAAGCATAATGTGATTATAACATCATATGATGTTATCCGTAAGGATATTGATTATTTGGGACAGCTTTTGTGGAAATACTGCATTTTGGATGAAGGACATATAATCAAGAATGCCAAGTCGAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGTTTGATATTGAGTGGGACACCGATACAGAATAATATCATGGACTTGTGGTCTCTCTTCGATTTTCTAATGCCTGGATTTCTTGGAACTGAGAGACAGTTCCAAGCCACATATGGAAAACCACTTTTAGCAGCAAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCTGGGGCACTTGCAATGGAGGCATTGCATAAGCAGGTGATGCCTTTCCTCCTTCGGAGAACAAAGGACGAAGTCTTGTCCGATCTACCAGAGAAAATAATTCAGGACAGATTCTGTGATTTGAGCGCTGTACAACTTAAACTTTACGAACAGTATTCTGGTTCTCATGTGAAACAAGAAGTATCGTCTATTGTAACAACAAATGAGCCAGGTGCAGCAGAAGGAAGTAGCAGTTCAACGAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATACTTGCTAAAACTGTGTAGTCATCCATTGCTTGTCACCGGGGAGAAGATTCCAGATCAACTCTCTATCGTCCTCTCAGGATTGTTTCCTCCTGGCTCTGACATTGTTTCAGAACTTCACAAACTTCACCACTCCCCAAAATTGGTTGCCCTTCAGGAGATTCTTGAAGAGTGTGGCATTGGAGTTGATGCTTCAGGTTCTGAGGGTGCTGTTGGGCAGCACAGGGTCTTAATATTTGCTCAACATAAGGCTTTTCTGGATATAATCGAAAGAGATTTGTTTCAGACAAATATGAAAAATATCACATATTTGCGGCTGGATGGATCTGTTGAGCCAGAAAAGCGTTTTGATATTGTCAAAGCTTTCAATTCAGACCCTACAATTGATGCCTTACTGCTTACAACACATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTCGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCCATGGATAGAGCACACAGATTAGGTCAGAAAAAAGTAGTTAATGTCCACCGTTTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGCCTACAAAGGTTCAAAGTGTCGGTGGCTAATGCTGTCATCAATGCTGAAAATGCCAGTATGAAAACAATGAATACAGATCAGCTGCTTGATTTATTTGCATCAGCAGAAATCCCCAAGAAGGGAGCATCTGTTGCAAAGAGTTCAGAGAACAACTATGATGGAGAAACAAAGTTAGTTGGCAGTGGGAAGGGGTTGAAAGCAATACTTGGAGGATTGGAGGAGTTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTCTTAGCAAAGCTTAATGGCTAA 6153 0.419 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDITKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHINLTELLASVVSKMSEDGISCSVEDLCAWPYVQSKINGSSFRSSFDINKVLEFGALLASGGQEYDIGSDNIKSPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMAHKSVSHLNGSHRAFASYSVHNNIQKMVANMVPTVKSKWPSARERNLLKRKAKINSKDQTKSWCEDGSTEASGTPNLTTKGTCPDSVNYSKAFIDVNHDEDGFEHDENGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKHNSRLDGAFFGELEDKSITNMPKREREIDLNMQVSVDEFESSLKRPKLEDVSSSTSMDSVMTCSNECDIDLSISSEAYGCNLPLDYGNGQFNGNSVDVDLESFSDGLHDAFKEPANFAEQKGYSDDNKIPSGNLHVLKNLPQNCELMNLVKVARSSWLQNCGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLIMQCRPEWEIRHGSLLGIKYLVAVRQEMLHDLLGRVLPACKSGLEDPDDDVRAVAADALIPSAAAIVSLQGQTLDSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMVPKMYEVFKLGDSEMADQNGVGVGCENGEENPFILSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGHKRSMSEQASASFWPSCIFGDTLRIVFQNLLLETNEGILQCSERVWSLLVLCSVEDLDTAAKSYMAPWIELTSTPFGSALDASKMFWPVAFPRKSQFRAAAKMRAARIENESGGDLGLDSTKGSIPQDRNGDVAISSAKIVVGADMDTSVTHTRVVTATALGIFASKLPEDSVKFVIDPLWRSLTALSGVQRQVASMVLISWFKEVKSRNSSENLNGIPGALKDWLLDLLGCTDPAFPTKDSLLPYAELSRTYSKMRSEAGQLLNAVKSSGLFNELLSTTKIDLNSLSVDDAISFASKVPALSNDSSVNEPLEKNTVDDIESSKQRLLTTSGYLKCVQSNLHITVSSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKSISSMESIDDQGLLSFGTPMSKQKSKVHVLAGEDRTKVEGFISRRGSELSLRLLCEKFGPLLFDKLPKLWDCLTEVLKPCSSESQAVTNENQVSVTIESVSDPQTLINNIQVVRSIAPLLNEELKPKLLTLLQCIFKCVQHSHVAVRLAAARCITSMARSMTVKVMGAVIENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVSYAPLLVVPLLRCMSDCDRSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTSIGNEDLLPSLIICPSTLVGHWAFEIEKYIDASVISSLQYVGSAQERVFLRDHFCKHNVIITSYDVIRKDIDYLGQLLWKYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRFCDLSAVQLKLYEQYSGSHVKQEVSSIVTTNEPGAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVTGEKIPDQLSIVLSGLFPPGSDIVSELHKLHHSPKLVALQEILEECGIGVDASGSEGAVGQHRVLIFAQHKAFLDIIERDLFQTNMKNITYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAEIPKKGASVAKSSENNYDGETKLVGSGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG* 2051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0016 2050 Gene3D - 509 688 IPR011989 -
Lan13g0016 2050 Pfam SNF2-related domain 1474 1770 IPR000330 GO:0005524|GO:0140658
Lan13g0016 2050 CDD SF2_C_SNF 1803 1943 - -
Lan13g0016 2050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1689 1988 IPR027417 -
Lan13g0016 2050 Gene3D - 1429 1687 IPR038718 -
Lan13g0016 2050 SMART helicmild6 1846 1932 IPR001650 -
Lan13g0016 2050 Gene3D - 4 97 IPR011989 -
Lan13g0016 2050 Gene3D - 1698 2011 IPR027417 -
Lan13g0016 2050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1435 1688 IPR027417 -
Lan13g0016 2050 Pfam Domain of unknown function (DUF3535) 785 1239 IPR022707 -
Lan13g0016 2050 Pfam Helicase conserved C-terminal domain 1831 1932 IPR001650 -
Lan13g0016 2050 CDD DEXHc_Mot1 1456 1688 IPR044078 GO:0005524
Lan13g0016 2050 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1468 1638 IPR014001 -
Lan13g0016 2050 SMART ultradead3 1452 1649 IPR014001 -
Lan13g0016 2050 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1809 1978 IPR001650 -
Lan13g0016 2050 Gene3D - 1100 1412 IPR011989 -
Lan13g0016 2050 SUPERFAMILY ARM repeat 6 1495 IPR016024 -
Lan13g0016 2050 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1982 IPR044972 GO:0003677|GO:0016887|GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0016 Lan-Chr13 73518 92535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0016 1451 1987 RAD5 or RAD16-like Gene Family AT1G02670 26.917 2.98e-40 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan13g0016 DUF3535 5.9e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0016 K15192 - gmx:100777977 3485.66