Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0005 ATGGAGGTGTTGAAGATCGACGTTGATGTTGATGTTGATGATAATGATAATGATAATGATGACGAGGGTTTTGATTGGGAAGCAGCTGCTGAAGAGATCGACGTTGTTTGCCAATCCACTTCAAAAGTTCACATTCTTCCAAATTCAAATTCAAATTCCAATTTCAAAGAAGAAGAAGAAGAAGAAGGGCCCACTCCCCACCCCATTGACCCTCACGCTGCCAAAACCTGGATATACCCGGTTAATGTTCCTCTCCGTGACTATCAATTTGATATAACCCACACCGCACTCTTTTCAAACACATTGGTGGCGTTGCCTACTGGGCTCGGCAAAACCCTCATTGCCGCAGTAGTCATGTTCAACTACTTCAGATGGTTCCCTCATGCTAAGATTGTATTCACTGCTCCCTCTCGCCCCCTTGTCATACAGCAGATCGAAGCCTGCCATAACATTGTTGGTATTCCTCAGCAATGGACCATCGATATGACTGGTCACCTTTCTCCTTCAAAAAGAGCTCTCTTTTGGAAAACTAAGCGTGTCTTTTTTGTTACTCCACAAGTCTTGGAAAAGGATATCCAATCTGGTATATGTTTCCTCAACCACTTGGTTTGTTTAGTCATTGATGAAGCTCACAGAGCAACAGGAAATTACTCATATTGTCAAGCAATCCGCCAGTTAATGGCTGTGCCTGTGCAACTTAGAATATTAGCCTTAACCGCAACACCAGGATCAAAGCCGCAGACTGTTCAGGATGTTATTGATAATCTGCATATCTCCAAGCTTGAATATCGCAGTGAAACTGACCATGATGTTATCTCATACATTCATAATAGGAAGATAGAGTTGATACAGGTTGCAATGGGACAAGATGCTGAACAAATAAACAATAGCTTTTTGGAAGTAATACGCCCAATAGTAGCTAGGCTTACTGGTATTGGGGCCATTCAAAACAGAGATTACCGCACTTTGAGCCCTTGTGTACTACTTGAGATGAGGGAAAAGTTTCGATCTAGGCAAGATCTTGCTCATGTAAACTATGGAGATGTTGAAGGATATTTTGGAGTTCTTATTACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAATAAGGCCTGCATATGAGATGCTTGAAAGAAAGTTGAAGCAAGGGTTTTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTGAATGCAAGGCAACTGATGCAGCAAAGCTTGTCTCATGGAGCATCAAGTCCCAAATTGTCTAAAATGTTAGAAGTATTATTGGAGCATTTCAAAATCAATGATCCGCAAAACTCAAGGGTAATTATTTTCTCCAATTATAGAGAAAGTGTCAGGGACATAATGGATGCCCTTGGAGGTACCGGAGAACCAATCAGAGCTACCCAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGTTCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCAAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACTGGAAGAAAGCATGATGGGCGAGTTGTAGTTTTAGCTTGTGAAGGGGCAGAGCTGAAAGGCTACTTCCGAAAACAGGCGAAGAGCAAGACTATAAATAAACACATGAGAAATGGGGGCATAAATAGCTTTACCTTTCATCCTAGTCCAAGGATGATTCCTCATGTCTTTAAACCAGAAGTTCAATATGTTGAGCTGTCCATCGAGAAATTTATTCCTCGTGAAAAGAATGTGAAAGACAAACCTCTTCAGATTTCTGCATCCGAGGACAAACTCACTGTTGCTGAAGTTGATTTGCTTGAAACATATTTTCAACCCACTGGGGAAAATACATGTAGATTGTCTCTTATTGCCTTTCCTCACTTTCAAACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCCTGTGGAACAATGATGCTTATAGACATGATGCAGCAATTGCAAGGACTAGTATCATTTACCGGAGATAGCAAAACTTCTTCTCTTCAGGAATATCAGTGTTTAGGGAAAAGCAAGCCAGTTGCTGTTAATGAGCTTGATGAAGCTAAAAAGGACAATGAATCAAGCCCTAGGCTTACAGTGGAAAGGAACTTACTCTCTGTAAATTGTCTGAATCTGGATTCCTGTCATTTGGGGATTCAAACCAAAGACTCTATTGATCTAACTCTACAAGATAGTACATGTGAGGGTGATGAGACGATTCCTGAGACTCCTCCAAGTGCTAAGAGAAGTGTGTCAAATAAAAGGGGTAATGCTGGTGAAACAGCCAATCTTGTGGAGATAGAGACTTCTTTGTTGCTGGAAGGTTCTTGCATTGATGGCATGAGAGATGAAGAACTTAGTCCCCGTTTAACTGATTTCATTCTAAGTGGTGTTGTTCCAGAATCCCCCATTGATGAAAGAGGGCATTCAAGAAATAAGTTTGTCATTCGAGACTTGTTACCTGTTCGTCCCCATGAAAGACAGGATGTTAATTCCTTAAGTTATAGGGAGACTGAAAAGGTTATTATTGATTGTGGCACTAGCAAAAATGTCTCCCCTGCTGTTGATAATGAAACTCAAACCCCTTTTCTTGAGCTGAAGAACCGTGCAACTAAGAGAGGACGTGTCTTCCTTTCTCCAACTGGTGAAGGCATTCCCAACCCAAGCTTAAGTGAAGAGTCACATTTAGGTTGTGGTGAAATGTCTGTAAGCATTAAACCTACACGCAAATTTAAAAGGTTGCGGAAAGCCGGAGATTGTGAAAACTCTATGAATCAGAATAACAATAATCTGGTTGGTTCAACAGCAAACCTTTCCAAAACATCTTCTATCTCTGATACCAGTCAATATAGGCAAGGCCGAGGTAAAAGGAAATCGGTGCATGGTGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTATCTTCAGATGATTCTGCATCTAATGATGAAGATGACGAGGATGTCAATTCATTTGACAGTTTCATAGATGACAGGACGAACCTTACAGCAGCTAGTCAGCCTGAAGCTAGTAGAATCGACATGATGGCAATTTACAGGCGTTCTTTGCTTAGTCAAACACCGATGAGTGAAGAGCTCAAATTTTCTGCATTCAGTCCTGACCATGTGATTTTGACAACCAGTGGAGATTCTTCAAGCAAGGTGATGAGTCATTTGCAGGCAGAGCCAACCATTAAGACTCCAGAATCAGTTCATATCAATCAAATAACCTCAGAAGCTGTGCCTCCAACTAGTTCCTCGACTGTGATAAGCCATAGAAGATTGACATTTAATCATTCTCAACACTTTCCAAATAAGAACCTTGACCAAGAATTTGCTTGTCAGTCAAAGAAAGAATCGGTGGATGCAACTGTGGATGTTCTATGTGATGATCAATTTTATAATGATCTTGATCTTGACGAGTTGGAGGCACAAGCAACTTGTCTTCTTAAACGTAAAGTAGATTTGTCAGTTCAGAAGCAAGATACAACAATCCCTGTATCTCACTCGCAGGACCTTGATATTCTTATGTCTCCATCATTTGACCTTGGGATATAA 3645 0.406 MEVLKIDVDVDVDDNDNDNDDEGFDWEAAAEEIDVVCQSTSKVHILPNSNSNSNFKEEEEEEGPTPHPIDPHAAKTWIYPVNVPLRDYQFDITHTALFSNTLVALPTGLGKTLIAAVVMFNYFRWFPHAKIVFTAPSRPLVIQQIEACHNIVGIPQQWTIDMTGHLSPSKRALFWKTKRVFFVTPQVLEKDIQSGICFLNHLVCLVIDEAHRATGNYSYCQAIRQLMAVPVQLRILALTATPGSKPQTVQDVIDNLHISKLEYRSETDHDVISYIHNRKIELIQVAMGQDAEQINNSFLEVIRPIVARLTGIGAIQNRDYRTLSPCVLLEMREKFRSRQDLAHVNYGDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGFFAKFMSKNEVILNARQLMQQSLSHGASSPKLSKMLEVLLEHFKINDPQNSRVIIFSNYRESVRDIMDALGGTGEPIRATQFIGQSSGKAMKGQSQKVQQAVLKKFRSGSYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYFRKQAKSKTINKHMRNGGINSFTFHPSPRMIPHVFKPEVQYVELSIEKFIPREKNVKDKPLQISASEDKLTVAEVDLLETYFQPTGENTCRLSLIAFPHFQTFPSRVHKVKHSCGTMMLIDMMQQLQGLVSFTGDSKTSSLQEYQCLGKSKPVAVNELDEAKKDNESSPRLTVERNLLSVNCLNLDSCHLGIQTKDSIDLTLQDSTCEGDETIPETPPSAKRSVSNKRGNAGETANLVEIETSLLLEGSCIDGMRDEELSPRLTDFILSGVVPESPIDERGHSRNKFVIRDLLPVRPHERQDVNSLSYRETEKVIIDCGTSKNVSPAVDNETQTPFLELKNRATKRGRVFLSPTGEGIPNPSLSEESHLGCGEMSVSIKPTRKFKRLRKAGDCENSMNQNNNNLVGSTANLSKTSSISDTSQYRQGRGKRKSVHGVRDFIEEEAEVSSDDSASNDEDDEDVNSFDSFIDDRTNLTAASQPEASRIDMMAIYRRSLLSQTPMSEELKFSAFSPDHVILTTSGDSSSKVMSHLQAEPTIKTPESVHINQITSEAVPPTSSSTVISHRRLTFNHSQHFPNKNLDQEFACQSKKESVDATVDVLCDDQFYNDLDLDELEAQATCLLKRKVDLSVQKQDTTIPVSHSQDLDILMSPSFDLGI* 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0005 1214 SMART ultradead3 81 274 IPR014001 -
Lan13g0005 1214 Pfam Helicase conserved C-terminal domain 425 539 IPR001650 -
Lan13g0005 1214 PANTHER FANCONI ANEMIA GROUP M PROTEIN 23 726 IPR039686 GO:0006281|GO:0043138
Lan13g0005 1214 PANTHER FANCONI ANEMIA GROUP M PROTEIN 760 1178 IPR039686 GO:0006281|GO:0043138
Lan13g0005 1214 MobiDBLite consensus disorder prediction 949 1024 - -
Lan13g0005 1214 Gene3D - 404 574 IPR027417 -
Lan13g0005 1214 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 584 IPR001650 -
Lan13g0005 1214 MobiDBLite consensus disorder prediction 1 23 - -
Lan13g0005 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 551 IPR027417 -
Lan13g0005 1214 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 760 1178 - -
Lan13g0005 1214 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 23 726 - -
Lan13g0005 1214 MobiDBLite consensus disorder prediction 950 980 - -
Lan13g0005 1214 CDD DEXDc_FANCM 83 264 IPR044749 GO:0005524
Lan13g0005 1214 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 92 260 IPR014001 -
Lan13g0005 1214 CDD SF2_C_FANCM_Hef 414 548 - -
Lan13g0005 1214 SMART helicmild6 446 540 IPR001650 -
Lan13g0005 1214 Coils Coil 1168 1188 - -
Lan13g0005 1214 CDD FANCM_ID 298 404 - -
Lan13g0005 1214 MobiDBLite consensus disorder prediction 1000 1021 - -
Lan13g0005 1214 MobiDBLite consensus disorder prediction 48 71 - -
Lan13g0005 1214 MobiDBLite consensus disorder prediction 765 786 - -
Lan13g0005 1214 Pfam Type III restriction enzyme, res subunit 99 242 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lan13g0005 1214 Gene3D - 81 275 IPR027417 -
Lan13g0005 1214 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0005 Lan-Chr13 24399 34652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0005 371 538 Eukaryotic Initiation Factors Gene Family AT3G13920 26.923 6.60e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0005 K10896 - gmx:100820078 1521.14