Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0004 ATGTTGTTCACTCACTCCATCTCAAACCTCCTATTATCTTTTTCCTTCAAAATGGAAACTCAAGAGATGGGGAGAGGAAAGATCGAAATAAAAAGGATAGAGAATACAACGAATCGACAAGTAACATTCTGCAAGAGAAGAAATGGACTTCTCAAGAAAGCTTATGAACTATCAGTGTTGTGTGATGCAGAAGTTGCCCTCATCGTCTTCTCTAGCCGTGGTCGCCTCTATGAGTATTCTAACAACAACATAAGGTCAACTATTGACAGGTACAGAAAAGCGTGCTCAGATAATTCAAGTATGAGTACAGCCACTGAAATTAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGAGGCAGCAAATACAAATGCTGCAAAACTCTAACAGACACTTGATGGGTGATGCATTGAGCACTCTGACTGTTAAGGAACTTAAGCAGCTTGAGAATAGACTTGAGAGAGGAATCACTAGAATCAGGTCTAAGAAGCATGAGATGCTGCTGGCTGAAATTGAGTACTTGCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTGTGCATTCGGACTAAGATAGGTGAAGTTGAGAGGGTTCAGCAAGCAAACATGGTTTCGGGACAAGAGTTGAATGCCATCCAAGCACTGGCTTCCCGCAATTTCTTCAATCCTAGCATCATGGAAACTGGAGCTGCCTACCCACAACCAGATAAAAAGATTCTTCATATTGGGTGA 735 0.4109 MLFTHSISNLLLSFSFKMETQEMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYRKACSDNSSMSTATEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENLCIRTKIGEVERVQQANMVSGQELNAIQALASRNFFNPSIMETGAAYPQPDKKILHIG* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0004 244 CDD MADS_MEF2_like 24 97 IPR033896 GO:0000977|GO:0045944
Lan13g0004 244 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Lan13g0004 244 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Lan13g0004 244 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Lan13g0004 244 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Lan13g0004 244 ProSitePatterns MADS-box domain signature. 25 79 IPR002100 GO:0003677|GO:0046983
Lan13g0004 244 ProSiteProfiles K-box domain profile. 109 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan13g0004 244 Coils Coil 146 185 - -
Lan13g0004 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 24 235 - -
Lan13g0004 244 SUPERFAMILY SRF-like 24 98 IPR036879 GO:0003677|GO:0046983
Lan13g0004 244 Pfam K-box region 108 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan13g0004 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 24 235 - -
Lan13g0004 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Lan13g0004 244 Gene3D - 35 132 IPR036879 GO:0003677|GO:0046983
Lan13g0004 244 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Lan13g0004 244 Coils Coil 109 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0004 Lan-Chr13 18180 23956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0004 23 244 MADS-box Gene Family AT4G09960 75.652 1.08e-122 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan13g0004 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0004 K09264 - gmx:100301905 399.438