Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0002 ATGGGTGAACACGACGAAGAGGAGAGGTATGAGGAGGAGGAGGAGGGCAATGGGGGAGACTCATATCCTCACGACTCCAAAACTCACAAGCATGCATCTCGCGATCGTGATTATGATAGAGATTCATCAAGAAGCAGCAGAGAAAAGGAAAAGGAAAAGGAACGAGAGAAAGGGAGGGAAAAGGATAGGAAACGAGAAAAGGAGAGAGACAGAGATCACCGTCATCGCGATCACAGGGACAGAAGGGAAAGAGAAAGGGAAAAAGGGAGGGATAAAAATGATGACGATGATTATTACAGAAGGCGGGACTATGACAGACGAAAGGATTATGATAGAGAGGACAAGCATAAACGCAGGTCTCGCTCTCGCTCCACTTCACCATTAAGGGATAGATCCCAACATAGATCAAGGTCTCGCTCAAAGAGCAAAAGGATTAGTGGTTTTGATATGGCTCCTCCTCCTTCTGCAATGTTAGCTGGTGCTTCCACCATTACAGGATTTTCAGGCCAGATCACTGGGGCAAATCCTGCAATTCCTGCAGTGTTTCAAAACATGTTTCCATTGGCTACCAGTCAGCCATTCAGTGCTCTCCCTGTCATGCCTGTTCAGGCTATGACACAACAGGCGACTCGCCATGCTAGAAGGGTGTATGTTGGAGGGCTGCCTCCTACAGCCAATGAGCAGTCAGTTGCTACTTTCTTCAGTCAGGTTATGGCTAATATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTAGTCAATGTTTACATTAACCATGACAAGAAGTTTGCATTTGTTGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTCTGGATGGGATTATTTTTGAGGGTGCACCAGTTAAAGTCAGGAGACCTACTGATTATAACCCTTCTCTAGCTGCTACCCTAGGCCCAAGCCAACCTAACCCAAACCTAAACTTGGCTGCTGTTGGCTTAATACCTGGGTCGGCCGGTGGACTTGAAGGCCCTGATCGAATTTTTGTTGGCGGAGTTCCTTACTACTTCACAGAAAATCAGATCAGGGAACTTTTAGAGACTTTTGGCCCTCTCCGTGGCTTTGATCTGGTTAAAGATAGAGAAACAGGAAATTCGAAGGGCTATGCATTTTGTGTTTACCAAGACCTTGCAGTTACAGATATTGCATGTGCAGCTCTGAATGGAATAAAGATGGGGGATAAGACTCTTACTGTTAGACGAGCTAATCAAGGTGCAAACCAACCTAAACCTGAGCAAGAAAATGTTCTAATGCATGCACAACAACAGATTGCTCTGCAGAAACTCATGTTTCAACCAACATTAGTGGCTACAAAGGTGGTATGCTTAACTCAAGCAGTTTCTCCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGAGGATATGAGACAGGAGTGTTCTAAATTTGGTACTTTGGTGAATGTCGTGATCCCCCGCCCACAACCGGATGGAGAACTGACCGCTGGAGTTGGAAAGGTGTTTTTAGAGTATGCTGACACTGATGGTGCTACAAAGGCATTTACTGGATTGAATGGGCGGAAGTTTGGTGGAAATCAAGTACAAGCTGTCTTTTATCCAGAGAACAAATTTGGTCAGGGAGATTATGAAGGCTAG 1647 0.4554 MGEHDEEERYEEEEEGNGGDSYPHDSKTHKHASRDRDYDRDSSRSSREKEKEKEREKGREKDRKREKERDRDHRHRDHRDRREREREKGRDKNDDDDYYRRRDYDRRKDYDREDKHKRRSRSRSTSPLRDRSQHRSRSRSKSKRISGFDMAPPPSAMLAGASTITGFSGQITGANPAIPAVFQNMFPLATSQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLIPGSAGGLEGPDRIFVGGVPYYFTENQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQENVLMHAQQQIALQKLMFQPTLVATKVVCLTQAVSPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPDGELTAGVGKVFLEYADTDGATKAFTGLNGRKFGGNQVQAVFYPENKFGQGDYEG* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0002 548 SMART rrm2_1 448 534 IPR003954 GO:0003676
Lan13g0002 548 MobiDBLite consensus disorder prediction 16 133 - -
Lan13g0002 548 Gene3D - 309 424 IPR012677 -
Lan13g0002 548 SUPERFAMILY RNA-binding domain, RBD 199 300 IPR035979 GO:0003676
Lan13g0002 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 412 IPR000504 GO:0003723
Lan13g0002 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 297 IPR000504 GO:0003723
Lan13g0002 548 MobiDBLite consensus disorder prediction 1 15 - -
Lan13g0002 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 453 538 IPR000504 GO:0003723
Lan13g0002 548 CDD RRM1_U2AF65 213 295 - -
Lan13g0002 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 531 IPR000504 GO:0003723
Lan13g0002 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 405 IPR000504 GO:0003723
Lan13g0002 548 Gene3D - 442 547 IPR012677 -
Lan13g0002 548 PANTHER RNA-BINDING PROTEIN 22 547 - -
Lan13g0002 548 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 40 546 IPR006529 GO:0003723|GO:0005634|GO:0006397
Lan13g0002 548 Gene3D - 209 308 IPR012677 -
Lan13g0002 548 CDD RRM3_U2AF65 446 534 - -
Lan13g0002 548 CDD RRM2_U2AF65 334 410 - -
Lan13g0002 548 MobiDBLite consensus disorder prediction 1 154 - -
Lan13g0002 548 SUPERFAMILY RNA-binding domain, RBD 335 537 IPR035979 GO:0003676
Lan13g0002 548 SMART rrm1_1 448 534 IPR000504 GO:0003723
Lan13g0002 548 SMART rrm1_1 215 293 IPR000504 GO:0003723
Lan13g0002 548 SMART rrm1_1 335 408 IPR000504 GO:0003723
Lan13g0002 548 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 22 547 - -
Lan13g0002 548 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0002 Lan-Chr13 8159 12492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0002 336 527 Eukaryotic Initiation Factors Gene Family AT1G22760 24.352 8.54e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0002 K12837 - gmx:100793801 719.153