Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1350 ATGAAACGCTCCAGCGATGACGTCACCAACACCTCAGCATCCAAGCCTGTCTTCCTCACCAAAGCCCAACGCGAAGAGTTAGCCCTTCAACGCCGCCAACTACAAATCGCTGATCAGAAGCGCCGCCACGACGACATCCTCTCCACCACAGATCTCAAACCCTCCTCCTCTGACCGCCGAGAACGGGACAGGGATAGGGACAGGGACAGGGATAGGCATAGGGACAGGGACAGGGATAGAGAACGTGAACGTGAACGAGAACGAGAGCGTGAAAGAGAACGCGACAGGGCTCGCGACAAGGCTCGGGAAGATGAGCGACGTAACCGGATGGAGAAATTGGCTGAGCGTGAGCGCGAGAAAGAGCTAGATGCGATAAAAGAACAGTACCTTGGTTCAAAGAAACCTAAGAAGCGAGTCATCAAACCTAGCGAGAAGTTCCGTTTCTCATTCGATTGGGAAAACACTGAGGACACTTCCCGCGACATGAATGTCCTTTACCAGAACCCTCACGAGGCTCAACCCCTCTTTGGTCGTGGTTTTCGTGCTGGAATGGATCGCCGTGAGCAGAAGAAGCTCGCTGCCAAGAACGAGAAGGAGATGAGGGACCAATTGCGGAAGAAGGATGGTATTGAGGAGAAGCCTGAGGAGGCTGATGCCCAACGCCGAAAGGAGGCTGCTGCTGATTTATATGATACCTTTGACATGAGAGTAGACCGTCATTGGAGTGAGAAGAAGCTTGATGAAATGACTGAGCGCGATTGGCGTATATTCAGGGAGGATTACAACATCTCCTACAAGGGTTCCAGAATTCCACGCCCTATGCGTAGCTGGATTGAGAGTAAGTTGAGCCTTGAGCTCTTGAAGGCCGTCGATAAGGCTGGTTACAAGACCCCTTCTCCAATTCAGATGGCTGCCATTCCTCTTGGTTTGCAACAGCGCGATGTTATTGGCATCGCTGAGACTGGTTCTGGGAAGACCGCTGCTTTTGTTCTTCCTATGTTGGCTTATATCAGTAAGCTTCCCCCCATGAGCGAGGAGATTGAGGCCGAGGGTCCATATGCTGTTGTTATGGCTCCCACTCGTGAGCTAGCACAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGATTTAAAGTTGTTTCCATTGTTGGTGGGCAGTCCATCGAGGAGCAAGGGTTTAAGATTAGGCAAGGTTGTGAGATTGTTATTGCCACTCCCGGTCGTTTGATTGATTGCTTGGAAAGGCGCTATTGTGTTCTAAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGATCGCATGATTGATATGGGGTTTGAGCCCCAGGTCATGGGTGTCCTGGATGCTATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAAGAGCTCGACGAGAAGAAGATTTATAGGACCACGTATATGTTCAGTGCCACCATGCCACCCGCTGTGGAGAGGCTTGCTAGGAAGTATTTAAGGAACCCTGTTGTGGTAACCATAGGCACTGCTGGAAAGGCCACTGATTTGATCAGTCAGCATGTGATCATGGTGAAGGAATCTGAGAAAATTCATAAGCTTCACAGGTTGCTGGATGAGCTTAATGACAAGACAGCAATTGTATTTGTTAACACCAAGAAGAATGCCGATATGGTTGCCAAGAATTTGGATAAGGATGGCTATCGTGTGACCACTTTGCATGGAGGGAAATCACAGGAGCAGAGGGAGATTAGTCTCGAAGGATTTAGGACCAAGAGATATAATGTTCTTGTTGCAACAGATGTTGCTGGACGTGGGATTGACATACCCGATGTGGCTCATGTCATAAACTATGATATGCCTGGGAATATTGAAATGTACACACATCGTATTGGGCGTACTGGCCGTGCAGGAAAGACTGGCGTGGCTACAACATTCCTGACACTTCATGACACTGATGTCTTTTATGACTTGAAGCAGATGCTTATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCACGAGGCTTCAAAATTCAAGCCAGGAAGTATTCCTGATAGACCTCCAAGAAGAAATGACACTGTGTTTGCGCACTAG 2088 0.4856 MKRSSDDVTNTSASKPVFLTKAQREELALQRRQLQIADQKRRHDDILSTTDLKPSSSDRRERDRDRDRDRDRHRDRDRDRERERERERERERERDRARDKAREDERRNRMEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQPLFGRGFRAGMDRREQKKLAAKNEKEMRDQLRKKDGIEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLDEMTERDWRIFREDYNISYKGSRIPRPMRSWIESKLSLELLKAVDKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISKLPPMSEEIEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGFKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYCVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMVKESEKIHKLHRLLDELNDKTAIVFVNTKKNADMVAKNLDKDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1350 695 Coils Coil 187 213 - -
Lan12g1350 695 MobiDBLite consensus disorder prediction 670 695 - -
Lan12g1350 695 MobiDBLite consensus disorder prediction 35 134 - -
Lan12g1350 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 654 IPR027417 -
Lan12g1350 695 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 528 672 IPR001650 -
Lan12g1350 695 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 430 438 IPR000629 -
Lan12g1350 695 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 275 303 IPR014014 GO:0003724
Lan12g1350 695 MobiDBLite consensus disorder prediction 34 138 - -
Lan12g1350 695 SMART ultradead3 294 516 IPR014001 -
Lan12g1350 695 MobiDBLite consensus disorder prediction 192 224 - -
Lan12g1350 695 CDD DEADc_DDX23 286 502 - -
Lan12g1350 695 Coils Coil 80 120 - -
Lan12g1350 695 Pfam Helicase conserved C-terminal domain 524 633 IPR001650 -
Lan12g1350 695 Gene3D - 506 693 IPR027417 -
Lan12g1350 695 CDD SF2_C_DEAD 513 642 - -
Lan12g1350 695 MobiDBLite consensus disorder prediction 663 695 - -
Lan12g1350 695 MobiDBLite consensus disorder prediction 1 21 - -
Lan12g1350 695 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 688 - -
Lan12g1350 695 PANTHER - 87 688 - -
Lan12g1350 695 SMART helicmild6 552 633 IPR001650 -
Lan12g1350 695 Pfam DEAD/DEAH box helicase 300 490 IPR011545 GO:0003676|GO:0005524
Lan12g1350 695 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 306 501 IPR014001 -
Lan12g1350 695 Coils Coil 519 539 - -
Lan12g1350 695 Gene3D - 236 505 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1350 Lan-Chr12 18996167 18998670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1350 276 669 Eukaryotic Initiation Factors Gene Family AT1G72730 33.165 2.94e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1350 K12858 - gmx:100792810 1165.6