Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1345 ATGGGTAGTGATGAGGCTCAACAGTCATTGCTTTCAGAGTCAAGAGATCATTCTCTTCTCAATGAAAAGAGTGACCTTCAAAGAAGAAGGCCGCACCGTGGCAGCACTTCAGATACAGAGATCAATCTCCAAGATAAAAATGTTGTCCAAAACCCTTCACACCTTCAATCAATATCTGCAACAAAACTAGAAGCTGAATTCCATTTCAAGCCAGTGTTCTTGTGTTTAGCTGCATACCTTGGTGCAGGTACCCTGTGTTTCTATTTCACAAGTTATCAGATGAAGGGTATAAAAACCAATAGGTTTCTTGATGCCATTTACTTCTGTGTTGTGACTATGACTACTGTTGGATATGGAGATCTTGTGCCTAATAGCTCATTTGCAAAACTACTTGCATGTATTTATGTCTTCACTGGCATGGCTCTTGTTGGTTTACTTCTTAGCAAGGCAGCAGATTACATTGTGGAAAAGCAGGAAGTCTTATTGGTTAGAGCCATTAACAAGGGTCGAAAACTTGGCCTAGCAGAGCTTTCTCAAGAGGTTGAAAATCACAGAGCCAAATACAAATTCATGGTAGCAGCAGCTACTTTTATTGTGCTCATGATTGTGGGAATTATTTTTCTGTATTTTGTTGAAAATCTAGATTTTGTGGATGCTTTCTACTGTGTCTGTGCCACAATCACTACTTTGGGTTATGGAGATGAGAGCTTCTCGACTACTATTGGTCGTACATTTGCTGTTTTTTGGATATTGAGCAGCACTATTTGCTTAGCTCAGTTTTTTGCCTATCTTGCTGAATTATATGCTGAAGGTAGACAAAAATCACTGGCGAAAATGGTTCTTACCCGAAAACTGTCACCCTCGGATCTTGAGGCAGCAGATCTTGATGGAGACAGAGTTATTAGTGCAGCAGAGTTCATTGTATACAAGTTGAAGGAAATGGGAAAGATCAGCCAAGAAGATATCTCAGATATGATGGAGAGCTTTAGAAAACTAGACCAAGATCAATCAGGAACTCTGACCGAAGCTGATCTTAGATGA 1041 0.3996 MGSDEAQQSLLSESRDHSLLNEKSDLQRRRPHRGSTSDTEINLQDKNVVQNPSHLQSISATKLEAEFHFKPVFLCLAAYLGAGTLCFYFTSYQMKGIKTNRFLDAIYFCVVTMTTVGYGDLVPNSSFAKLLACIYVFTGMALVGLLLSKAADYIVEKQEVLLVRAINKGRKLGLAELSQEVENHRAKYKFMVAAATFIVLMIVGIIFLYFVENLDFVDAFYCVCATITTLGYGDESFSTTIGRTFAVFWILSSTICLAQFFAYLAELYAEGRQKSLAKMVLTRKLSPSDLEAADLDGDRVISAAEFIVYKLKEMGKISQEDISDMMESFRKLDQDQSGTLTEADLR* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1345 346 Gene3D - 283 346 - -
Lan12g1345 346 Coils Coil 174 194 - -
Lan12g1345 346 MobiDBLite consensus disorder prediction 1 15 - -
Lan12g1345 346 PRINTS Two pore domain K+ channel signature 111 139 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lan12g1345 346 PRINTS Two pore domain K+ channel signature 228 237 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lan12g1345 346 SUPERFAMILY Voltage-gated potassium channels 166 270 - -
Lan12g1345 346 MobiDBLite consensus disorder prediction 1 43 - -
Lan12g1345 346 ProSitePatterns EF-hand calcium-binding domain. 333 345 IPR018247 -
Lan12g1345 346 Pfam Ion channel 75 155 IPR013099 -
Lan12g1345 346 Pfam Ion channel 197 267 IPR013099 -
Lan12g1345 346 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 17 344 - -
Lan12g1345 346 SUPERFAMILY EF-hand 285 346 IPR011992 -
Lan12g1345 346 Gene3D - 53 170 - -
Lan12g1345 346 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 17 344 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lan12g1345 346 Gene3D - 172 274 - -
Lan12g1345 346 ProSiteProfiles EF-hand calcium-binding domain profile. 320 346 IPR002048 GO:0005509
Lan12g1345 346 MobiDBLite consensus disorder prediction 16 36 - -
Lan12g1345 346 SUPERFAMILY Voltage-gated potassium channels 69 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1345 Lan-Chr12 18966538 18969125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1345 45 345 Ion Channels AT5G55630 55.150 4.16e-117 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1345 K05389 - gmx:100799492 512.686