Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1335 ATGGCAAGCTCATGTTTCCATGCACTTCGGTTAAGATGGTCGAAGAGTAAAGCTTTACCAGACCCTTCATCTTCTTCATCCATGAAAAGGTTGAACTCTGACATAGAAAACATGGAAAGAAGGAGGTTTGATAGCTTGGAATCATGGTCCATGATACTAGAGTCTGAGAATGTGGAGACATGGGAAGCCTCAAAGGAGGATCAGGAGGAATGGACTGCAGATCTTTCGCAACTTTTCATCGGCAACAAATTCGCATCCGGAGCTCATAGTCGAATTTACCGTGGAATTTACAAGCAAAGAGCCGTTGCTGTGAAAATGGTGAGGATTCCAAGTCAGGATGAGGAGAGAAGAGCCTTGCTTGAGCAGCAGTTCAAATCTGAAGTGGCTTTACTTTCACGTCTCTTTCATCCAAACATAGTTCAGTTTATTGCAGCTTGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATTTGAACAAGAAAGAGCCATACTCTCTATCTATAGAAACAATACTGAGGTTAGCTCTGGACATATCTAGGGGTATGGAGTACCTTCACTCACAAGGCGTCATTCACAGAGACCTCAAGTCAAATAACTTGCTTCTCAATGATGAAATGAGGGTTAAGGTGGCAGATTTTGGAACATCTTGTCTTGAAACTCGATGCCGCGAGACCAAAGGAAACATGGGAACATATCGTTGGATGGCACCTGAAATGGTTAGGGAGAAACCTTATACTCGCAAAGTTGATGTGTATAGTTTCGGTATTGTACTATGGGAACTCACAACTGCTCTACTTCCCTTCCAAGGAATGACCCCTGTGCAAGCTGCTTTCGCTGTTGCTGAGAAGAACGAAAGGCCTCCACTGCCTGCTAGTTGTCAGCCAGCAATTGCTCATCTGATAAAGCGTTGTTGGTCAGAAACCCCTTCAAAGCGGCCAGATTTCAGTGAAATCGTGTCTACTCTGGAGAAGTTTGATGAATGCATCAATGAGGGTCTACCTCTAACTCACCATTCTCGGCTAGTCACCCGAAACGCCATTATTGAACGCTTAAAAGGCTGTGTCTCCATGAGCTCCTCTATACCTGTACATGCTTGA 1128 0.4406 MASSCFHALRLRWSKSKALPDPSSSSSMKRLNSDIENMERRRFDSLESWSMILESENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPSQDEERRALLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMVREKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPAIAHLIKRCWSETPSKRPDFSEIVSTLEKFDECINEGLPLTHHSRLVTRNAIIERLKGCVSMSSSIPVHA* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1335 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Lan12g1335 375 SUPERFAMILY Protein kinase-like (PK-like) 54 332 IPR011009 -
Lan12g1335 375 Pfam Protein tyrosine and serine/threonine kinase 80 332 IPR001245 GO:0004672|GO:0006468
Lan12g1335 375 Gene3D Phosphorylase Kinase; domain 1 67 160 - -
Lan12g1335 375 PRINTS Tyrosine kinase catalytic domain signature 156 169 IPR001245 GO:0004672|GO:0006468
Lan12g1335 375 PRINTS Tyrosine kinase catalytic domain signature 194 212 IPR001245 GO:0004672|GO:0006468
Lan12g1335 375 PRINTS Tyrosine kinase catalytic domain signature 240 250 IPR001245 GO:0004672|GO:0006468
Lan12g1335 375 PRINTS Tyrosine kinase catalytic domain signature 259 281 IPR001245 GO:0004672|GO:0006468
Lan12g1335 375 PRINTS Tyrosine kinase catalytic domain signature 303 325 IPR001245 GO:0004672|GO:0006468
Lan12g1335 375 ProSiteProfiles Protein kinase domain profile. 78 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1335 375 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 363 - -
Lan12g1335 375 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 363 - -
Lan12g1335 375 CDD STKc_MAP3K-like 85 332 - -
Lan12g1335 375 Gene3D Transferase(Phosphotransferase) domain 1 161 353 - -
Lan12g1335 375 SMART serkin_6 78 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1335 Lan-Chr12 18935851 18938729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1335 1 375 MAP Kinase Kinase Kinase AT1G62400 81.026 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan12g1335 PK_Tyr_Ser-Thr 3.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1335 - - gmx:100799437 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1335 12 18935851 18938729 Lan4g0439 4 6557046 6559805 PCT
Lan12g1335 12 18935851 18938729 Lan16g0365 16 3531320 3536372 PCT