Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1332 ATGAAGCTCGACAACTCCAACGGTAAATTATGCGCGCCAACAAACTCATCAGACTCCATCCCCGCCGACGACGATGACGCGGAGGAGATATTCGTGCCGCCATTGAACTTCGCCATGGTGGATAATGGCATCTTTAGATGTTTGTGCCCTGAACCCTATCCTGAAGCTACCCTGGAATTCTTGAAGGCTAGCAGAATTAGGCTTTATCAATTCGGAATTGATGGCTGTAAGGAACCTTTTGTCAACATCCCACATGATATAGTCCGTGAAGCTTTGAAAGTAGTCCTTGATGATAGAAACCACCCCCTACTGATTCACTGTAAACGAGGGAAGCATCGCACAGGTTGTCTTGTGGGGTGCATAAGAAGATTGCAGAGATGGTGTCTATCATCTGTTTTTGACGAATACCAGAGGTTTGCAGGTGCCAAGGCCCGAGTGTCAGACCAGAGGTTCATTGAACTGTTTGATCTTTCATGTCTGAAGCATCACCCACTGTCATTTTCAAGCTCAAGGAAATATAATTTTGAATAA 531 0.4539 MKLDNSNGKLCAPTNSSDSIPADDDDAEEIFVPPLNFAMVDNGIFRCLCPEPYPEATLEFLKASRIRLYQFGIDGCKEPFVNIPHDIVREALKVVLDDRNHPLLIHCKRGKHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRFIELFDLSCLKHHPLSFSSSRKYNFE* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1332 176 ProSitePatterns Tyrosine specific protein phosphatases active site. 105 115 IPR016130 GO:0016311|GO:0016791
Lan12g1332 176 Gene3D Protein tyrosine phosphatase superfamily 30 159 IPR029021 -
Lan12g1332 176 PRINTS Plant and fungal dual specificity phosphatase signature 47 60 IPR020428 GO:0016791
Lan12g1332 176 PRINTS Plant and fungal dual specificity phosphatase signature 66 80 IPR020428 GO:0016791
Lan12g1332 176 PRINTS Plant and fungal dual specificity phosphatase signature 83 97 IPR020428 GO:0016791
Lan12g1332 176 MobiDBLite consensus disorder prediction 1 20 - -
Lan12g1332 176 Pfam Tyrosine phosphatase family 48 165 IPR004861 -
Lan12g1332 176 PANTHER - 18 47 - -
Lan12g1332 176 PANTHER - 48 170 - -
Lan12g1332 176 MobiDBLite consensus disorder prediction 1 23 - -
Lan12g1332 176 PANTHER TYROSINE-PROTEIN PHOSPHATASE 18 47 - -
Lan12g1332 176 PANTHER TYROSINE-PROTEIN PHOSPHATASE 48 170 - -
Lan12g1332 176 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 157 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1332 Lan-Chr12 18924216 18927555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1332 1 174 Protein tyrosine phosphatase (PTP) family AT4G03960 57.436 1.48e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1332 K18045 - gmx:100785520 286.96