Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1327 ATGGTCCCTTCAACTCAACTCTTGTTGTTATCATGTTTCTTATTACAATTTGCATCAACCTTTGTTAACTCCTCCTACTATCCAACACAAAGTTACTACCATGTCCCAAAGACTCCTCACAAAGCATTATTGAATGAGATAGATTCTTGTTGGATTGCAAATTCAAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGGTTTGGTAAATATGCAATTGGAGGAAAATATGGTGCAATTTATACAGTCACAGATTCCTCTGATGACCCTATAAACCCAAAACCAGGGACACTTCGTTATGGTGTAATCCAAACACAACCCCTTTGGATAATATTCAGCAAGGATATGGTTATTACATTAGAAAATGAGCTTATAATGAATAGTTATAAGACCATTGATGGGAGAGGGGTTAAAGTGGAGATTTCAAATGGGCCTTGCATTACTATACAATATGTTAGCTATGTTATAATACATGGTATTAGCATCCATGATTGTAAACCAGGAAAGAGTGGACTTGTTAGAAGTACTCCTGAACATGTTGGTCATCGTCAAGGCTCTGATGGAGATGCAATTAGTATATTTTCTTCATCATATGTTTGGGTTGATCATTGCTATTTAGCTAGTTGCACTGATGGCCTCATTGATATTATTCATGCCTCAACTGCCATTACCATTTCTAACAATTACTTCACCAACCATGACAAAGTTATGCTGCTAGGACACAACGACCAAAACACAGCAGATAAAATAATGAAAGTAACAATAGTGTTCAACCGTTTTGCTACTGGGCTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCACATGTGGTGAACAACAAATATGATGAGTGGAAAATGTATGCTATGGGGGGCAGTGCTAACCCAACCATCTTCAGTGAAAGCAACTTCTTTATAGCATCCAATAACCAATTTGCAAAACAGGTTACAAAGAGAGAAGCGAAGAACAACTGGAAGAGTTGGAAATGGAGATCTTCAAAGGATATATTCCTAAATGGTGCTTATTTTGTACCATCAGGGTATGGAAGTTGTGCACCTAATTATTCAAAAGCTCAATCTTTTACTGCTGCACCAGCATTCACTGTCCCAGCAATCACTCTCAATGCGGGTCCTTTGACTTGTGTTGTTGGCAGAGCATGTTAA 1176 0.3827 MVPSTQLLLLSCFLLQFASTFVNSSYYPTQSYYHVPKTPHKALLNEIDSCWIANSNWASNRQALADCAIGFGKYAIGGKYGAIYTVTDSSDDPINPKPGTLRYGVIQTQPLWIIFSKDMVITLENELIMNSYKTIDGRGVKVEISNGPCITIQYVSYVIIHGISIHDCKPGKSGLVRSTPEHVGHRQGSDGDAISIFSSSYVWVDHCYLASCTDGLIDIIHASTAITISNNYFTNHDKVMLLGHNDQNTADKIMKVTIVFNRFATGLIERMPRVRFGYAHVVNNKYDEWKMYAMGGSANPTIFSESNFFIASNNQFAKQVTKREAKNNWKSWKWRSSKDIFLNGAYFVPSGYGSCAPNYSKAQSFTAAPAFTVPAITLNAGPLTCVVGRAC* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1327 391 PANTHER PECTATE LYASE 18-RELATED 1 390 IPR045032 GO:0030570
Lan12g1327 391 Pfam Pectate lyase 129 309 IPR002022 -
Lan12g1327 391 SMART amb_all 118 315 IPR002022 -
Lan12g1327 391 SUPERFAMILY Pectin lyase-like 45 382 IPR011050 -
Lan12g1327 391 PANTHER PECTATE LYASE 1 390 - -
Lan12g1327 391 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Lan12g1327 391 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Lan12g1327 391 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Lan12g1327 391 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Lan12g1327 391 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Lan12g1327 391 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Lan12g1327 391 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Lan12g1327 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Lan12g1327 391 Gene3D - 44 384 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1327 Lan-Chr12 18893583 18895141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1327 7 391 Polysaccharide Lyase AT1G11920 65.803 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1327 K01728 - gmx:100807483 642.499