Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1314 ATGCAGCAAGGTGGATATGGAGGAGGTATGGTTCCACAGCAACAGCAACAGCATCAGCAACAGCAAGGGTACACGATGATGCCACCTCAGCAACCTACCAACGCCGATGAGATCCGTACCCTCTGGATCGGCGATCTCCAATATTGGATGGATGAGAATTATCTCTATACCTGTTTCGCTCACACCGGCGAGGTTGCTTCAGTGAAAGTCATTAGAAATAAGCAAACTAGTCAATCAGAAGGTTATGGATTTATTGAGTTTACAAGTCGTGCTGGTGCTGAGAGAGTTCTTCAATCATATAATGGCACCATTATGCCAAATGGAGGCCAGAACTTCAGGATGAATTGGGCAAGTTTTAGTGCCGGCGAGAGGCGTCATGATGATTCTCCTGATTACTCCATTTTTGTTGGAGACTTGGCTGCAGATGTTACTGATTACCATCTTCAGGAGACGTTTAGGGCGCGTTATTCCTCAGTTAAAGGAGCCAAAGTTGTAATTGATAGGCTCACCGGACGGACTAAGGGTTACGGTTTCGTTAAGTTTGGAGATGAGAGTGAACAAATTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGCTCTACAAGGGCAATGCGGGTTGGACCAGCATCTAATAAGAACCCTACCACTCAACCTAAAGCTCCATATCAGAATCCTCAGGGGGCACAGAACGACAATGATCCAAATAACACAACTATTTTTGTCGGCAATCTGGATCCTAATGTCACGGACGATCATCTGAGACAAGTTTTCGGGCAGTATGGAGAGTTAGTTCATGTGAAGATTCCTTCAGGCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTATGCAGAAGGGGCACTGCAGGGTTTAAATGGAACCCTTTTAGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGACTCAAACAGATCCAAACCAGTGGAATGGTGGTGGAGGGTATTATGGATATGGTCAGGGTTATGAAAATTATGGTTATGCTCCTCCTCCTCCTGTTGGACAGGACCCCAACATGTATGGAAGTTATCCAGCGGGATATGGAAATTACCAACCTCCCCAGCAACAGCACCAAACGGGATATAGTTAA 1128 0.4583 MQQGGYGGGMVPQQQQQHQQQQGYTMMPPQQPTNADEIRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQSYNGTIMPNGGQNFRMNWASFSAGERRHDDSPDYSIFVGDLAADVTDYHLQETFRARYSSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMQGVLCSTRAMRVGPASNKNPTTQPKAPYQNPQGAQNDNDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPSGKRCGFVQFADRSYAEGALQGLNGTLLGGQNVRLSWGRSPSNKQTQTDPNQWNGGGGYYGYGQGYENYGYAPPPPVGQDPNMYGSYPAGYGNYQPPQQQHQTGYS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1314 375 MobiDBLite consensus disorder prediction 303 325 - -
Lan12g1314 375 Gene3D - 218 341 IPR012677 -
Lan12g1314 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 309 IPR000504 GO:0003723
Lan12g1314 375 CDD RRM2_SECp43_like 131 210 - -
Lan12g1314 375 Gene3D - 9 129 IPR012677 -
Lan12g1314 375 CDD RRM3_NGR1_NAM8_like 236 307 - -
Lan12g1314 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 106 IPR000504 GO:0003723
Lan12g1314 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 197 IPR000504 GO:0003723
Lan12g1314 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 302 IPR000504 GO:0003723
Lan12g1314 375 SMART rrm1_1 133 207 IPR000504 GO:0003723
Lan12g1314 375 SMART rrm1_1 238 305 IPR000504 GO:0003723
Lan12g1314 375 SMART rrm1_1 40 115 IPR000504 GO:0003723
Lan12g1314 375 SUPERFAMILY RNA-binding domain, RBD 13 119 IPR035979 GO:0003676
Lan12g1314 375 MobiDBLite consensus disorder prediction 206 237 - -
Lan12g1314 375 MobiDBLite consensus disorder prediction 339 375 - -
Lan12g1314 375 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 372 - -
Lan12g1314 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 119 IPR000504 GO:0003723
Lan12g1314 375 Gene3D - 131 207 IPR012677 -
Lan12g1314 375 SUPERFAMILY RNA-binding domain, RBD 117 225 IPR035979 GO:0003676
Lan12g1314 375 MobiDBLite consensus disorder prediction 1 31 - -
Lan12g1314 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 211 IPR000504 GO:0003723
Lan12g1314 375 CDD RRM1_SECp43_like 40 120 - -
Lan12g1314 375 MobiDBLite consensus disorder prediction 303 323 - -
Lan12g1314 375 MobiDBLite consensus disorder prediction 361 375 - -
Lan12g1314 375 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 17 372 - -
Lan12g1314 375 SUPERFAMILY RNA-binding domain, RBD 219 335 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1314 Lan-Chr12 18824492 18827764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1314 41 316 Eukaryotic Initiation Factors Gene Family AT4G34110 25.795 3.79e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1314 - - gmx:100796848 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1314 12 18824492 18827764 Lan4g0406 4 6250306 6254548 PCT
Lan12g1314 12 18824492 18827764 Lan19g0670 19 12667516 12671607 PCT
Lan12g1314 12 18824492 18827764 Lan16g0400 16 3894011 3899157 PCT