Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1310 ATGAATATTAGTATATCTTTATTATCATCAGTTGCGTGCAAGCCCCTAGTGAATTTTCAATCGGCACTCACCACCACCACGACGGAGTCCTTGTTATTTCAGCATCATCAACAACAACGTAAGGACAAGGTGGTAGTTATCATGGGGGCCACCGGCACCGGCAAGTCTAAGTTGGCCATAGACCTAGCCACTCATTTCCCACCGGCAGAGATAGTCAACTCTGACAAGATGCAAGTTTACAAAGGTCTTGATATCACCACCAACAAGGTCAATGAAGAAGAATGCCGTGGGGTCCCACATCATCTCCTAAGCATTGTTGATGATCCTAACTACAATTTCACTGCCACTGATTTTTGCCACCATGCCTCTCTAGCCATTGATTCCATTGTAGACAGAGATGGCTTGCCCATCATTGCTGGTGGATCCAACTCCTTTCTTCATGCTTTGGTGAACCATGACTCGACGTTTCGATTAAGGTATGAGTGTTGTTTCCTCTGGGTGGACGTGTCACTTCCCGTTCTTCATTCATCTCTCTCAGCAAGAGTAGATAGAATGATAGAAGCTGGACAAGTTGATGAAATTCGTGAGTTTTTCGACCATTCTATTAGTGACTACAGAAGAGGAGTTAGAAGGGCTATAGGGGTTCCAGAATTTGATGAATTTTTAAGAGAAGAAACCAGAGGTGGTGATGAAATGATAAAGAAGAAGCTTCTGGAAGTTGCCATTGCTATGACAAAAGTGAATAACTGCAAGCTAGCCAACCGCCAAGTGCAAAAGATCCATCACCTTTACAAGATTTGGAAAAAGAACATGCATAGGTTAAACGCCACTGAGTCTGTATTCAACAAAAGCGCATGGGAGGATGACGTGGCGGAAAAGGGTCGTAGGATCGTGCAAAAGTTTCTATATGATGATACTTCAGCCTTTGTTTCCGCCCGTATGCCGCTGCCGTCGCTTCCACCAACTATGGCATCGGTAACTCATTGA 987 0.4438 MNISISLLSSVACKPLVNFQSALTTTTTESLLFQHHQQQRKDKVVVIMGATGTGKSKLAIDLATHFPPAEIVNSDKMQVYKGLDITTNKVNEEECRGVPHHLLSIVDDPNYNFTATDFCHHASLAIDSIVDRDGLPIIAGGSNSFLHALVNHDSTFRLRYECCFLWVDVSLPVLHSSLSARVDRMIEAGQVDEIREFFDHSISDYRRGVRRAIGVPEFDEFLREETRGGDEMIKKKLLEVAIAMTKVNNCKLANRQVQKIHHLYKIWKKNMHRLNATESVFNKSAWEDDVAEKGRRIVQKFLYDDTSAFVSARMPLPSLPPTMASVTH* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1310 328 Gene3D - 41 302 IPR027417 -
Lan12g1310 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 206 IPR027417 -
Lan12g1310 328 Pfam IPP transferase 157 258 - -
Lan12g1310 328 Pfam IPP transferase 78 151 - -
Lan12g1310 328 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 33 306 - -
Lan12g1310 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 171 271 - -
Lan12g1310 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 306 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1310 Lan-Chr12 18794173 18795500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1310 159 315 C2H2 Transcription Factor Family AT2G27760 30.811 2.32e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1310 K10760 - gmx:100778430 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1310 12 18794173 18795500 Lan12g1310 12 18794173 18795500 ECH
Lan12g1310 12 18794173 18795500 Lan1g0985 1 20355300 20356602 LSH