Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1308 ATGATGACGATGATGAACATGGTGAACGCGTTAATGGTGACTCGTATGTTGAGTCGTGATCACGGTGATGTTGTTCCTCTCTATGCTACCGAAGAAATTCCCTTCGGATCGGTATGGTGGTTCGTCTATGCCGGAATCTCATGTTTTCTCGTTCTCTTTGCTGTGATCATGGTGAGAATCAGTGTGTTGAACGATGCTCTGAAGAGTATGTACAATGCTGAGAAAAGAGGGAAACGTCAAGTGATGATTAGGCCTTCTTCTAAAGTGATTATAAAATTCCTGATTGTTATGCAGAAGCATGGATACATTGGTGAATTTGAGTATGTGGATGATCATAGGGCTGGTAAAATTGTTGTTGAATTGAATGGTAGATTGAATAAGTGTGGTGTTATTAGTCCTCGTTTTGATGTTGGTGTTAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCTTCTAGACAGTTTGGATACATAGTGTTGACCACTTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTCCTGGGCTTCTTTTACTAG 561 0.4153 MMTMMNMVNALMVTRMLSRDHGDVVPLYATEEIPFGSVWWFVYAGISCFLVLFAVIMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1308 186 Pfam Ribosomal protein S8 63 186 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lan12g1308 186 Gene3D - 126 186 - -
Lan12g1308 186 PANTHER 40S RIBOSOMAL PROTEIN S15A 57 186 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lan12g1308 186 SUPERFAMILY Ribosomal protein S8 60 186 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lan12g1308 186 Hamap 30S ribosomal protein S8 [rpsH]. 58 186 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lan12g1308 186 Gene3D - 57 125 - -
Lan12g1308 186 PANTHER BNAA02G06730D PROTEIN 57 186 - -
Lan12g1308 186 ProSitePatterns Ribosomal protein S8 signature. 156 173 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1308 Lan-Chr12 18774349 18789427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1308 57 186 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 99.231 1.93e-93 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1308 K02957 - thj:104809034 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1308 12 18774349 18789427 Lan1g0015 1 73067 74640 LSH
Lan12g1308 12 18774349 18789427 Lan4g0386 4 6076193 6078243 PCT
Lan12g1308 12 18774349 18789427 Lan19g0664 19 12505259 12507217 PCT
Lan12g1308 12 18774349 18789427 Lan16g0431 16 4246476 4248068 PCT
Lan4g0386 4 6076193 6078243 Lan12g1308 12 18774349 18789427 PCT
Lan19g0664 19 12505259 12507217 Lan12g1308 12 18774349 18789427 PCT
Lan16g0431 16 4246476 4248068 Lan12g1308 12 18774349 18789427 PCT