Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1307 ATGCTGCCTGATCAGAGAAAAAAGTCCTCTGCAGATGTAGACTTCTTTACAGAATATGGTGAAGGGAGTAGATACAAAATTGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACTGGAGAGAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTCTCTGATGCCACCCGCATTCTTCGCGAGATCAAACTTCTTAGACTCTTACGTCATCCTGATATTGTGGAAATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAACTCATGGAATCTGACTTACACCAGGTCATCAAAGCAAATGATGATTTGACTCCTGAGCATTACCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCGAATGTTTTTCACCGAGATTTAAAGCCAAAAAACATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGATTTTGGTCTTGCCAGAGTGGCTTTCAATGATACACCAACTGCTATATTCTGGACGGATTATGTTGCAACAAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCATTTTTCTCCAAGTATACACCAGCTATAGACATATGGAGCATTGGCTGCATTTTTGCTGAACTTTTAACTGGAAAACCTCTTTTCCCGGGGAAGAATGTTGTCCATCAGTTGGATATCATGACTGATTTTCTTGGAACCCCATCTCAAGAAGCCATTGCTAGGATACGGAATGAGAAAGCTCGTAGATACTTGAGCAGCATGCGTAAAAAGAAACCAGTTCCTTTCTCCCACAAGTTTCCCAATGCAGACCCCCTTGCTCTTCGTTTGTTAGAAAGGATGCTGGCATTTGAGCCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCCAAAGTTGAGAGAGAGCCTTCTGCTCAACCAGTTACCAAGATGGAATTTGAATTTGAGAGACGCAGGATAACAAAGGAAGATGTGCGAGAGCTTATATACAGAGAGGCTCTGGAGTACCATCCGCAGATGTTGAAGGAACATCTAGATGGAGAAGAACCAACGGGTTTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAGCAATTTGCATATCTTGAGGAGCACTATGGAAAAGGTGGAACTGTTACTCCACCCGAGAGGCAACATGCATCACTACCCAGGCAATGTGTGTTGTATTCAGATAAATCAAGACAGAATACATCTGAGGTTGCAGAAGATCTCTCCAAGTGTTATATCAAAGAAGTTGAGAGGCCAGCCATAGATAGGAGTGGTGCTCCTCAAAATATTCAAGGCGTTGCCGCACGGCATGGAAAAGTTGTTGCTTCAGCATTACGTTACAACAACTGTGGGGTAGCAGTGACAGCAGAGGCCGAGCAGCAGAGGGTAGGCAAGAACTCATCCGTTTCAGCCCAGTACGCTGCTTCAAACTGTTCATATCCTAGGAGAAACTCAAGCTGTAAAAATGAAAGGGCAGAAGATGATGGGGTTGAGGCTTCTAATGAGCTTCAGCCAAAGCCTCAGTACATGGTGCGAAAAGTTGCTGCTGCTCAAGATGGAGCTGGTGGTAATTGGTATTGA 1659 0.4286 MLPDQRKKSSADVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSQEAIARIRNEKARRYLSSMRKKKPVPFSHKFPNADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREALEYHPQMLKEHLDGEEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRQCVLYSDKSRQNTSEVAEDLSKCYIKEVERPAIDRSGAPQNIQGVAARHGKVVASALRYNNCGVAVTAEAEQQRVGKNSSVSAQYAASNCSYPRRNSSCKNERAEDDGVEASNELQPKPQYMVRKVAAAQDGAGGNWY* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1307 552 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Lan12g1307 552 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1307 552 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 476 - -
Lan12g1307 552 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Lan12g1307 552 MobiDBLite consensus disorder prediction 512 526 - -
Lan12g1307 552 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1307 552 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1307 552 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 476 - -
Lan12g1307 552 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lan12g1307 552 MobiDBLite consensus disorder prediction 505 531 - -
Lan12g1307 552 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Lan12g1307 552 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Lan12g1307 552 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1307 Lan-Chr12 18766597 18771760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1307 1 552 MAP Kinase Gene Family AT5G19010 78.435 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lan12g1307 Pkinase 4.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1307 - K04371 gmx:100814013 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1307 12 18766597 18771760 Lan12g1307 12 18766597 18771760 ECH
Lan12g1307 12 18766597 18771760 Lan1g0987 1 20361960 20367752 LSH
Lan12g1307 12 18766597 18771760 Lan1g0016 1 76350 81130 LSH