Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1300 ATGTCGCCTTCAGTTGTCCAAGAAAACGGAAGTAGGAATAAGAGAAAATTCCGGGCTGATCCGCCTTTAGGGGAGCTGAATAAGATTATTCCTGCACCTCAGCATGCATGCTTCAATTACGAATTCTCTGCTGAGAAGTTTGAAATAAGCAGAGGTCATGTGCAAGCCACTGCTGGTGACCTGTGTAGTGTTAACCATGATCGTTTTGATGGATTGAAGCTTGGCCTCGGATTGTGTAGTCCTGGAAGTTCATCCAAGATCGGGCCTTGTCAACCTAAGGAAGAAGTCGAAGCAGATGAATATGATGACATTGATTGGAATGATCTCACTGAAGCCCAATTGGAAGAACTTGTCTTGAGTAATTTGGACGCCATTTTCAAGAGTGCAATTAGAGAAATTGTTGCATGTGGCTACACTGAAGAAGTTGCTCGTAATGCCGTCTCGAGGTCTGGTATATGTTATGGATGCAAGGATACCGTGTCTAATATAGTTGATAACACACTACCATTCCTTAGGAAAGGCCAGGAAGTTGATACTTCACGAGAGCACTATTTTGAAGATCTAGTGCAGCTTGAGAAGTATATCTTGGCTGAAATGGTTTGTGTTCTTCGAGAGGTTAGGCCTTTCTTCAGCACTGGGGATGCAATGTGGTGTTTGCTAATATGTGATATGAATGTGTCACATGCTTGTGCAATGGATGTTGGCCCTTCAAGAGGAGGGAAGCAGAGTGGCTTAAGTGGTTCAATCTTGGATAAAAAACTTAAGCCTGTGTCGGAATCTTCTACCATGAACAAGAGTGCATCCTTACAGATAAGTAAGGCAGCGGGAGTTGAAGTGACTGAAGACAATCTTGGTGCTAGTTTCTCACCTAATGCTGGACCATCTGCCCCTGCTGCATTTAACCTGGATTCTGCTGCTGCTGTTTTTAGATCAATCAATACTCCATATTCAGTACATCCAGCAAATACAATACCTGCATTTAGTAGCCCCAGTTCATTATCAACCACAGATACTGATCTTTCTCTTTCATTGTCTTCTAAAACCAAGTTGTCCACGACGCCTGTCTGCTGCAATAATGAGGCACCTAATAGCAGTCATGTGGGGAAGCCGTTTGACAAGTCCCTAGGGCAGTGGGTACCCCAGGATAAAAAGGATGAGGTGATTTTGAAGCTGGTTCCAAAGGCAAGGGGGCTGCAAAATCAGGTTCAAGAATGGACCGAGTGGGCCAATCAGAAGGTAATGCAGGCTGCTTGTCGGCTGGGTAAAGACAAGGTCGAGCTTAAGACACTAAGGCAAGAGAAAGATGAAGTTGAACGTCTTAAGAAAGAGAAGCAATCTCTTGAGGAAAACACCATAAAGAAGCTCTCCGAGATGGAAAATGCCTTGTGTAAAGCCAGTGGGCAGGTACAGCGAGCTAATGCTGCGGTCCAGAAGCTCAAGGTGGAGAATGCTGCACTGAGGAGAGAGATGGAAGCTGCTAAGCTACGAGCTGCAGAAACTGCCACAAACTTTGAAGAGGTCTCAAGGAGAGAAAGGAAAACTCAATTGCAGTTTCAGTCATGGGAAAAGCAGAAGTTCTTGCTTCAAGAAGAGCTAATGAGTGAAAAACACAAATCTGCAAAGCTGCTACTGGAATCAGAGCAAGCTAAAATGCAACAGGAACAAGTTGAGGCTAGATGGCAGCAGGAAGCAAAGGCAAAAGAAGAACTTCTCTTACAGGCTAGTTCTATAAGGAAAGAAAGAGAACAAATTGAGGAGTTAACAAAATCCAAGGAGGATATAATCAAATCGAAAGCAGAGAAGAATCTGCAAAGGTTCAGAGATGATATCCATAAACTTGAAAAAGAAATTGCACAACTGAGACTGAAGAGTGACTCTTCCAAGATTGCTGCACTGAAGATGGGCATTGATGGAAGCTATGCTAGCAGATTCGTTGACATGAAAAATGGTAATGCTTTAGAGGAACACCGGGCTTCTGTTATCTCAGAACTAGTTAGTGATTACTCGGCGACAGGCAGTGTGAAACGTGAAAGGGAATGCGTGATGTGCCTTTCTGAGGAGATGTCTGTTGTGTTCCTCCCATGTGCTCATCAGGTTGTTTGCACAACATGCAATGAGCTCCATGAGAAACAGGGTATGCAAGATTGTCCTTCTTGCAGGAGCCCCATCCAGAGGCGTATTCCTGCCCGTTTTACCCATATTTAA 2205 0.4413 MSPSVVQENGSRNKRKFRADPPLGELNKIIPAPQHACFNYEFSAEKFEISRGHVQATAGDLCSVNHDRFDGLKLGLGLCSPGSSSKIGPCQPKEEVEADEYDDIDWNDLTEAQLEELVLSNLDAIFKSAIREIVACGYTEEVARNAVSRSGICYGCKDTVSNIVDNTLPFLRKGQEVDTSREHYFEDLVQLEKYILAEMVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDVGPSRGGKQSGLSGSILDKKLKPVSESSTMNKSASLQISKAAGVEVTEDNLGASFSPNAGPSAPAAFNLDSAAAVFRSINTPYSVHPANTIPAFSSPSSLSTTDTDLSLSLSSKTKLSTTPVCCNNEAPNSSHVGKPFDKSLGQWVPQDKKDEVILKLVPKARGLQNQVQEWTEWANQKVMQAACRLGKDKVELKTLRQEKDEVERLKKEKQSLEENTIKKLSEMENALCKASGQVQRANAAVQKLKVENAALRREMEAAKLRAAETATNFEEVSRRERKTQLQFQSWEKQKFLLQEELMSEKHKSAKLLLESEQAKMQQEQVEARWQQEAKAKEELLLQASSIRKEREQIEELTKSKEDIIKSKAEKNLQRFRDDIHKLEKEIAQLRLKSDSSKIAALKMGIDGSYASRFVDMKNGNALEEHRASVISELVSDYSATGSVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSPIQRRIPARFTHI* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1300 734 PANTHER OS05G0141500 PROTEIN 4 235 - -
Lan12g1300 734 PANTHER OS05G0141500 PROTEIN 235 732 - -
Lan12g1300 734 Pfam Family of unknown function (DUF6592) 121 232 IPR046527 -
Lan12g1300 734 SUPERFAMILY RING/U-box 670 726 - -
Lan12g1300 734 Coils Coil 420 457 - -
Lan12g1300 734 Coils Coil 469 503 - -
Lan12g1300 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 729 IPR013083 -
Lan12g1300 734 MobiDBLite consensus disorder prediction 1 22 - -
Lan12g1300 734 Coils Coil 567 630 - -
Lan12g1300 734 PANTHER OS05G0141500 PROTEIN 235 732 IPR046934 -
Lan12g1300 734 PANTHER OS05G0141500 PROTEIN 4 235 IPR046934 -
Lan12g1300 734 Pfam Zinc finger, C3HC4 type (RING finger) 677 725 - -
Lan12g1300 734 ProSiteProfiles Zinc finger RING-type profile. 680 720 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1300 Lan-Chr12 18729062 18733268 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1300 - - mnt:21386696 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1300 12 18729062 18733268 Lan12g1300 12 18729062 18733268 ECH
Lan12g1300 12 18729062 18733268 Lan1g0991 1 20388240 20392535 LSH
Lan12g1300 12 18729062 18733268 Lan1g0021 1 101362 105509 LSH
Lan12g1300 12 18729062 18733268 Lan4g0373 4 5980404 5984109 PCT
Lan4g0373 4 5980404 5984109 Lan12g1300 12 18729062 18733268 PCT