Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1298 ATGGACAATAATCAACAACCATCACATGCACAACCTTCTTTCACCAATAGCTTTCGCAAATTAGAAAGAGAGCAAATAGAAGGAAGTGGAACACCTTTAAGAAGCAGGACACTACGGATTGAGTCTTCTTATTCACTTTCAAGATTTGACTTGGAGTCTTTAAACAATGAGAAGGGTGATGTAGATCAAGATTGCTCAACAAGTATAGAACCTGAAACCCCTTGTTCCAATGCCAGCACTTCTGATTCAGAAGATCAGCCAGATTCATATAGCAGTAGCAATATGCGCGGTTTCCTTAATTTGCTGAAGAAAGGGTCTCAAATGCCCTTCCAACCCTTTCAACCTCTTAAGAATGTTCCGAAACTCAGAAGAAAAAGCAACAGAATCAGGGAGGACCTGATTCCACCACTGAGTCCTCCAACTCTAAAACCATCTCTGAAACCCTCTCTTACCAACGACTTTTCTTGCTTTAAATCTTCCTGGAAAAATTTTACTCTCGAAGATCTCCAAGCTGCAACCGATAATTTCAGTCATGAGAATTTGATTGGTGAGGGAGGTTATGCTGAGGTTTATAAAGGCAAATTGGACGACGGAAATTTTGTTGCAATTAAACGGCTGACACGAGGGAACCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTGGACCACCCGAATATTGCTAGGTTGATTGGATATGGTGTTGAAGGCGGAATGCATCTTGTTCTTCAGTTATCTCCACATGGAAGCTTATCGTCCATACTTTATGGAAGTCGTGAGAAACTCGATTGGAACACAAGATATAAGATTGCTTTGGGAACTGCTGAGGGCCTTCGCTATCTGCACGAAGAATGTCAAAGAAGGATTATTCACAGAGATATTAAGGCTTCTAATATATTGCTTTTGGAGAATTTTGAGCCACAGATATCTGATTTTGGGCTTGCAAAATGGTTACCTGACCAATGGAGTCACCATACTGTCTCTAAATTTGAAGGCACATTTGGATATCTTCCTCCTGAATTCTTTATGCATGGAATAGTTGATGAAAAAACTGATGTCTATGCATATGGAGTGCTATTATTAGAGCTCATTACCGGACGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTTATGTGGGCGAAACCTCTGCTATCTACAAACAACATCAAAGAGCTTGTTGATCCATGTTTGAATGATGACTATGATGAAGAGCAAATGAAATTTTTAATCTTAACAGCTTCTTTGTGTATAGACCAGTCTTCAGTTCGACCGCAAATGAACCAGGTATTACAGATGTCAAGAGGTGAAGAAGAGAGCTTGAAGCTGTTAAGAGAAAGACAGAACTTACCTCAGAGGACCTACTCTGAAGAACTCTTTGATGCAGAAGACTACAACTCAACTAAGTTTTTGAGTGACATGGATAGACATATGGAGACTATTCTAGGCTCATGTAACTAA 1479 0.4003 MDNNQQPSHAQPSFTNSFRKLEREQIEGSGTPLRSRTLRIESSYSLSRFDLESLNNEKGDVDQDCSTSIEPETPCSNASTSDSEDQPDSYSSSNMRGFLNLLKKGSQMPFQPFQPLKNVPKLRRKSNRIREDLIPPLSPPTLKPSLKPSLTNDFSCFKSSWKNFTLEDLQAATDNFSHENLIGEGGYAEVYKGKLDDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMHLVLQLSPHGSLSSILYGSREKLDWNTRYKIALGTAEGLRYLHEECQRRIIHRDIKASNILLLENFEPQISDFGLAKWLPDQWSHHTVSKFEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSTNNIKELVDPCLNDDYDEEQMKFLILTASLCIDQSSVRPQMNQVLQMSRGEEESLKLLRERQNLPQRTYSEELFDAEDYNSTKFLSDMDRHMETILGSCN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1298 492 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 37 477 - -
Lan12g1298 492 MobiDBLite consensus disorder prediction 1 95 - -
Lan12g1298 492 Pfam Protein kinase domain 177 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1298 492 PANTHER OS08G0249100 PROTEIN 37 477 - -
Lan12g1298 492 MobiDBLite consensus disorder prediction 30 52 - -
Lan12g1298 492 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Lan12g1298 492 MobiDBLite consensus disorder prediction 66 95 - -
Lan12g1298 492 SUPERFAMILY Protein kinase-like (PK-like) 156 439 IPR011009 -
Lan12g1298 492 SMART serkin_6 176 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1298 492 ProSiteProfiles Protein kinase domain profile. 176 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1298 492 Gene3D Phosphorylase Kinase; domain 1 142 250 - -
Lan12g1298 492 MobiDBLite consensus disorder prediction 1 19 - -
Lan12g1298 492 Gene3D Transferase(Phosphotransferase) domain 1 253 461 - -
Lan12g1298 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1298 Lan-Chr12 18721387 18724671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1298 147 480 Receptor kinase-like Gene Family AT1G53420 39.359 3.63e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lan12g1298 Pkinase 4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1298 - - lja:Lj6g3v1915960.1 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1298 12 18721387 18724671 Lan12g1298 12 18721387 18724671 ECH