Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1296 ATGCCAAGGTATCGAAGCCGTAGCAGAAGCTACAGCCCCCGCCGCCGCAGCCGAACGCCACCGCGCGGACGCAAGCGTTACGATGACGATCGCGGTGGCAGTCGTTCTTACCGTGATCGTCGCTCTCCACTTCCTTCTGGTTTGCTTGTTCGTAACCTTCCCCTTGATGCTAGACCTGAAGATCTTCGTGGTCCATTCGAGCGCTTTGGTCCTGTTAAAGATGTTTATCTTCCGAAAAATTACTATACTGGTGAGCCTCGTGGCTTTGGGTTTGTGAAATATCGACACGGTGAAGATGCAGCTGAGGCCAAGCAACAGCTTGATCATACTATCATTGGTGGACGTGAAATCAGAATTGTCTTTGCTGAAGAAAATCGAAAAACTCCTCAAGAAATGCGTGTTACTTCTCGCGGAAGTGATCGACATGGAGGTGGTAGAAGAAGGCCTCGTTCAAGATCCAGAACCCCAAGACGCCGCCATCATTCCTACTCTCGTTCCCCATCTCCAGCTAGGGATGATTCAAGGGATGGCAGGGGTCGGGATGATTATTACTCTTCTAAGAGATCAAGGTCTTATTCTAGGTCTCAATCTCCTATTGGTGGGAGGAACTCTAGGAGGTCCTCACATCCCAGGGAGAATGACCTGAGTCCTAGTGAAAAGAGAGATCGTTCACCTAGCAGGCCAAGGTCTTATTCTAGATCTCCTGCTCCAAGTGGTGAGAAGGAATATAGAAAGTCCCCTCCTCTCAGAGAGAATGGTCGGAGTCCTATTGATGAGAGGGATCAGGCACCCACCAGATCACCAAGTCCTAGGGGTAATGGTCACAGTCCTTCAAGGTCTCGTTCTCGTTCATACAGCCCACGCTGA 867 0.5029 MPRYRSRSRSYSPRRRSRTPPRGRKRYDDDRGGSRSYRDRRSPLPSGLLVRNLPLDARPEDLRGPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRHGEDAAEAKQQLDHTIIGGREIRIVFAEENRKTPQEMRVTSRGSDRHGGGRRRPRSRSRTPRRRHHSYSRSPSPARDDSRDGRGRDDYYSSKRSRSYSRSQSPIGGRNSRRSSHPRENDLSPSEKRDRSPSRPRSYSRSPAPSGEKEYRKSPPLRENGRSPIDERDQAPTRSPSPRGNGHSPSRSRSRSYSPR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1296 288 SMART rrm1_1 47 120 IPR000504 GO:0003723
Lan12g1296 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
Lan12g1296 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Lan12g1296 288 MobiDBLite consensus disorder prediction 205 228 - -
Lan12g1296 288 MobiDBLite consensus disorder prediction 122 142 - -
Lan12g1296 288 MobiDBLite consensus disorder prediction 143 164 - -
Lan12g1296 288 Gene3D - 2 138 IPR012677 -
Lan12g1296 288 MobiDBLite consensus disorder prediction 189 204 - -
Lan12g1296 288 MobiDBLite consensus disorder prediction 122 288 - -
Lan12g1296 288 MobiDBLite consensus disorder prediction 1 46 - -
Lan12g1296 288 MobiDBLite consensus disorder prediction 22 38 - -
Lan12g1296 288 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 214 - -
Lan12g1296 288 SUPERFAMILY RNA-binding domain, RBD 48 153 IPR035979 GO:0003676
Lan12g1296 288 MobiDBLite consensus disorder prediction 165 188 - -
Lan12g1296 288 MobiDBLite consensus disorder prediction 1 21 - -
Lan12g1296 288 SMART rrm2_1 47 120 IPR003954 GO:0003676
Lan12g1296 288 MobiDBLite consensus disorder prediction 238 265 - -
Lan12g1296 288 MobiDBLite consensus disorder prediction 266 288 - -
Lan12g1296 288 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 7 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1296 Lan-Chr12 18708859 18712287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1296 50 108 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1296 K12900 - gmx:100788749 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1296 12 18708859 18712287 Lan1g0027 1 138030 140654 LSH