Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1290 ATGTCATCCACCTCTAGAACCAAATCAGATGCATATGCATCATCATTGAAAGGACCACATGAACCAAACCAAGCCCAAAATTGCTTATCACTTGTTCAAAGAAACACATGTTCTTCTGGTGAGAGAAGAGGGAGAAAAAAGCAAGCAGAACCAGGAAGATTTGTTGGTGTAAGGAAGCGACCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACAAAAGAAAGACACTGGCTTGGAACATTTGACACTGCTCAAGAAGCTGCACTTGCTTATGATAAAGCTGCTCTATCCATGAAAGGAAACCAAGCAAGAACCAATTTTGTTTACTCTCATAATATCAATTTTCACACTCTTGTTACTTCTCAAATAGATGTTCAAATTCAACCTTTATTGCCAACTTCACAAGTTCTAGGTACTAACACTCAGACCAATCAAAAAACCATGTCTCAGTTGAACATTGAAAATATGTGTGTTGTTGAAACTGCAAATAGTTCATCAACTTATCAGGATGATAATTTATTCTTTTCAAATGATTGTAGCTCAGGCTATTTGGAATGCATTGTTCCTGATAATTGTTTTAGACCTGGTTCTGGTTCCAGTACCAACAGTTCATACTCAAGAAAGAGCATTTCTTGTGCTCCAAGTAATGATGATCAAAAGGTAAACTCACTTAACAACACAAACTACATTGAGAGTACTTTACTTCTTGATCAAATGGCAAGTTCATTCTCTCCTCAAGAAGGATTATGGAATAACCAGCAATATTCATGGGATTGGAATTCAAGTGAACTTTCAGCTATATTTAACAACAATAACAATAGCAATGCATTAAGGGTTGAACATGATGGGTGCATGGATCATAATAGTGAGTCTAGTCCAAGCTATGGACTAATGAATGAAGCTGCTTCTTCAACTATATGTTTTCCACCCTTTGAGGACGTAGACTTGGGATACCACCAACTCTTATGA 975 0.3723 MSSTSRTKSDAYASSLKGPHEPNQAQNCLSLVQRNTCSSGERRGRKKQAEPGRFVGVRKRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDKAALSMKGNQARTNFVYSHNINFHTLVTSQIDVQIQPLLPTSQVLGTNTQTNQKTMSQLNIENMCVVETANSSSTYQDDNLFFSNDCSSGYLECIVPDNCFRPGSGSSTNSSYSRKSISCAPSNDDQKVNSLNNTNYIESTLLLDQMASSFSPQEGLWNNQQYSWDWNSSELSAIFNNNNNSNALRVEHDGCMDHNSESSPSYGLMNEAASSTICFPPFEDVDLGYHQLL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1290 324 SUPERFAMILY DNA-binding domain 54 111 IPR016177 GO:0003677
Lan12g1290 324 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Lan12g1290 324 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Lan12g1290 324 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Lan12g1290 324 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Lan12g1290 324 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 321 - -
Lan12g1290 324 CDD AP2 53 109 IPR001471 GO:0003700|GO:0006355
Lan12g1290 324 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Lan12g1290 324 MobiDBLite consensus disorder prediction 1 28 - -
Lan12g1290 324 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Lan12g1290 324 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1290 Lan-Chr12 18682894 18683902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1290 19 310 AP2-EREBP Transcription Factor Family AT5G18560 34.571 2.01e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan12g1290 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1290 - - lang:109362072 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1290 12 18682894 18683902 Lan1g0045 1 247089 248487 LSH
Lan12g1290 12 18682894 18683902 Lan4g0357 4 5833878 5834985 PCT
Lan12g1290 12 18682894 18683902 Lan16g0466 16 4583529 4584555 PCT
Lan4g0357 4 5833878 5834985 Lan12g1290 12 18682894 18683902 PCT
Lan16g0466 16 4583529 4584555 Lan12g1290 12 18682894 18683902 PCT