Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1289 ATGGAACGTTACGGACGCGCCAGCGAAGGTTCACACTCTGATCCGTCGCCGGAATGGGGCTACCAAGAGTTATCATGGCAAGGGAGAAATGGTGGTGCTGAATCATACCCTCAGCGACCTGATGAGGCTGATTGTATCTACTTTCTCAAGAACGGTTTTTGTGGCTATGGCTCTCGATGCCGCTTCAATCATCCTTGTCACAGTGCCAGAATAATTACTGGTGCTGCTAGGACTGGAGTAGGGGAGTATCCAGAACGAGTAGGTCAGCCTGTATGTCAGTATTATATGAGGACGGGATCATGCAAATTTGGCCCTTCATGCAAGTACCACCATCCCAGGCAGGGAGCAGGCATTGCTGCCCATGTTTCACTAAATTATTATGGATATCCATTGCGAACGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGGCAATGCAAGTTTGGTACAACTTGTAAATTCCATCATCCACAGCCTGTGGGCGTCCAGATTCCAGCGCCATCACCAGTCCCCCCAGTTTCACCTCTGGCTGTGCCTGTACCTTCACCATTATATCAAACTGTACAGTCTCCATCTGGTCCTTCTTCACAGCAATACGGTGTACTGGTTGCAAGGCCATCTTTGCTACCTGGGTCATTAGTTCAGGGCCCCTATGGGCCGATGGTAGTGTCCCCTACCATGGTCCCCTTTTCTGGCTGGGGTCCTTATCAGGGTCCTGCAACAAGCCCAGTACATCCTTCTAGTACTGCATCTAATGTTGGTTCAACCCAGCTTTATGGGATAACACAGATCCCTTCACCGACAACTGCCTATGCTGGGCCTTATCAACCTTCTGGTTCCCTACTTGGTCCTTCTGGCAGTGGTCAGAAGGAGCACTCATTGCCAGAAAGGCCCGACCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCAGCAGACATGAGTGCTTCAAAAACGAATGTGATCATTAGCCCTGTGGGTCTTCCTTTGCGCCCGGGGGCATCCGTTTGCACTCATTATACCCAAAGGGGAGTTTGTAAGTTTGGTCCTACATGCAAATTTGATCATCCTATGGGATCACTGAGTTATAGTCCTTCTGCTTCTTCCCTGACTGACATGCCTGTTGCACCCTATTATTCTGTGGGTTACTCGCATGGTACTCTTGCTCCGTCATCTTCATCATCAGAGTTGCGGCATGAACCTACCTCAGGATCCAGCAAGGAGCCTGCTTCATCCAGAATGTCTTCATCAATGAGCACACCAACTGGATCAGTTGGCTTGACCTTGTCAAGTGGTGGACCAGTTTCTCAATCAGGCACCCAAGCATCTGTTCAGAGTTCCAGTTGTTTAGCAACTACCGATGCCACCATGAGTAGCACTGTCTCATACACCTCAATCTAA 1440 0.4875 MERYGRASEGSHSDPSPEWGYQELSWQGRNGGAESYPQRPDEADCIYFLKNGFCGYGSRCRFNHPCHSARIITGAARTGVGEYPERVGQPVCQYYMRTGSCKFGPSCKYHHPRQGAGIAAHVSLNYYGYPLRTGEKECSYYVKTGQCKFGTTCKFHHPQPVGVQIPAPSPVPPVSPLAVPVPSPLYQTVQSPSGPSSQQYGVLVARPSLLPGSLVQGPYGPMVVSPTMVPFSGWGPYQGPATSPVHPSSTASNVGSTQLYGITQIPSPTTAYAGPYQPSGSLLGPSGSGQKEHSLPERPDQPECQYYMKTGECKFGPSCRYHHPADMSASKTNVIISPVGLPLRPGASVCTHYTQRGVCKFGPTCKFDHPMGSLSYSPSASSLTDMPVAPYYSVGYSHGTLAPSSSSSELRHEPTSGSSKEPASSRMSSSMSTPTGSVGLTLSSGGPVSQSGTQASVQSSSCLATTDATMSSTVSYTSI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1289 479 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Lan12g1289 479 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Lan12g1289 479 Gene3D - 117 167 - -
Lan12g1289 479 SUPERFAMILY CCCH zinc finger 41 70 IPR036855 GO:0046872
Lan12g1289 479 MobiDBLite consensus disorder prediction 271 288 - -
Lan12g1289 479 SUPERFAMILY CCCH zinc finger 89 114 IPR036855 GO:0046872
Lan12g1289 479 MobiDBLite consensus disorder prediction 271 300 - -
Lan12g1289 479 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Lan12g1289 479 Gene3D - 344 426 - -
Lan12g1289 479 Gene3D - 289 338 - -
Lan12g1289 479 Gene3D - 37 116 - -
Lan12g1289 479 SUPERFAMILY CCCH zinc finger 134 159 IPR036855 GO:0046872
Lan12g1289 479 SUPERFAMILY CCCH zinc finger 347 374 IPR036855 GO:0046872
Lan12g1289 479 ProSiteProfiles Zinc finger C3H1-type profile. 86 114 IPR000571 GO:0046872
Lan12g1289 479 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Lan12g1289 479 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Lan12g1289 479 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Lan12g1289 479 SMART c3hfinal6 86 113 IPR000571 GO:0046872
Lan12g1289 479 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Lan12g1289 479 MobiDBLite consensus disorder prediction 1 24 - -
Lan12g1289 479 PANTHER PROTEIN PHOSPHATASE RELATED 1 469 - -
Lan12g1289 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Lan12g1289 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 41 65 IPR000571 GO:0046872
Lan12g1289 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 371 IPR000571 GO:0046872
Lan12g1289 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 324 IPR000571 GO:0046872
Lan12g1289 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 159 IPR000571 GO:0046872
Lan12g1289 479 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 469 - -
Lan12g1289 479 MobiDBLite consensus disorder prediction 402 464 - -
Lan12g1289 479 SUPERFAMILY CCCH zinc finger 301 326 IPR036855 GO:0046872
Lan12g1289 479 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1289 Lan-Chr12 18673748 18680970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1289 1 441 C2H2 Transcription Factor Family AT5G18550 53.796 8.11e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan12g1289 zf-CCCH 4.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1289 - - gmx:100789405 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1289 12 18673748 18680970 Lan12g1289 12 18673748 18680970 ECH
Lan12g1289 12 18673748 18680970 Lan1g1008 1 20489331 20493052 LSH
Lan12g1289 12 18673748 18680970 Lan1g0046 1 249700 253773 LSH
Lan12g1289 12 18673748 18680970 Lan4g0356 4 5820861 5831216 PCT
Lan12g1289 12 18673748 18680970 Lan16g0467 16 4585833 4594863 PCT
Lan4g0356 4 5820861 5831216 Lan12g1289 12 18673748 18680970 PCT
Lan16g0467 16 4585833 4594863 Lan12g1289 12 18673748 18680970 PCT