Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1287 ATGTTGAGTGGGAGCATGGATTCTGCAAGGGATGGTGTTGTTGTTGCAGGGACAGTGCTTATTCCAATGCGATTTGTGTGGCCATATGGGGGAAGAAGTGTCTATCTCAGTGGTTCTTTTACGCGGTGGTCTGAGCTTCTACAAATGTCTCCGGTCGAAGGTTGCCCATCTGTGTTTCAAGTAATTCATAGTTTAGCTCCTGGTTATCACCAGTACAAGTTTTATGTTGATGGAGAATGGCGACATGATGAGCATCAACCTTATATGTCAGGAGAATTCGGAATAGTTAACACTGTTTTATTAGCTACTGATCCTAATTTTGTACCCGTTTTACCTCCGGACATAGCTTCTGGATCTAACATGGATGTGGACAATGAGGCTTTTCGCCGTGTGGTTCGGTTGACAGATGTTTCACTGAGTGATGTGTTGCCGAGAATATCAGATGTTGATTTACAAATGTCCCGTCAGCGTATTTCTGCATTCCTGTCTATGCGCACAGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCCTTAGATGTTGATCTGCCAGTCAAGCAGGCATTTCACATTCTACATGAGCAGGGAATTCCTGTGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGAGTTCTCAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGTCTTCTCAGATCGGGAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACGCATACTGTATCGGCTTGGAAAGAAGGAAAGTTTTACCTAAATAGACAAAACAATGGACATAGAACAGCATTTTCAAGGCCTTTTATTCATGCTGGGCCATATGAAAATTTGAAAGATGTTGCTATGAAAATCCTTCAAAATGAGGTTTCAACAGTCCCTATTGTCCATTCATCTTCTGAAGATGGTTCATTTCCACAGCTACTACATCTTGCTTCACTCTCAGGAATACTTAAATGCATTTGCAGGTATTTCAGGCATTGTTCTAGTTCGTTGCCTATACTTCAACTTCCAATTTGTGCAATTCCTGTTGGCACATGGGTGCCCAAAATTGGGGAGTCAAATCGTCGACCTTTGGCAATGTTGAGACCAAGTGCTCCGCTTGCTTCAGCCCTAAACTTATTAGTTCAAGCTCAAGTGAGTTCAATACCAATAGTTGATGATACTGACACATTACTGGATATATACTGTCGGAGTGATATAACCGCTTTGGCAAAGGATAGAGCTTATACACACATTAATCTTGATGGGATGACTGTCCATCAGGCATTGCAGTTGGGCCAGGACTCTTATGATCCTTATGAGCTGAGAAGTCAAAGATGTCAGATGTGTTTGCGATCTGATTCACTCCATAAAGTGATGGAACGTTTGGCAAATCCAGGTGTGAGGCGAATTGTAATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATCGTTTCACTGAGTGACATATTTAAGTTCTTCCTTGGTTGA 1482 0.4258 MLSGSMDSARDGVVVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPSVFQVIHSLAPGYHQYKFYVDGEWRHDEHQPYMSGEFGIVNTVLLATDPNFVPVLPPDIASGSNMDVDNEAFRRVVRLTDVSLSDVLPRISDVDLQMSRQRISAFLSMRTAYELLPESGKVVALDVDLPVKQAFHILHEQGIPVAPLWDFCKGQFVGVLSALDFILILRESSQIGNHGSNLTEEELETHTVSAWKEGKFYLNRQNNGHRTAFSRPFIHAGPYENLKDVAMKILQNEVSTVPIVHSSSEDGSFPQLLHLASLSGILKCICRYFRHCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAMLRPSAPLASALNLLVQAQVSSIPIVDDTDTLLDIYCRSDITALAKDRAYTHINLDGMTVHQALQLGQDSYDPYELRSQRCQMCLRSDSLHKVMERLANPGVRRIVIVEAGSKRVEGIVSLSDIFKFFLG* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1287 493 Gene3D Immunoglobulins 18 101 IPR013783 -
Lan12g1287 493 CDD E_set_AMPKbeta_like_N 22 100 - -
Lan12g1287 493 Pfam CBS domain 359 405 IPR000644 -
Lan12g1287 493 Pfam CBS domain 446 492 IPR000644 -
Lan12g1287 493 ProSiteProfiles CBS domain profile. 439 493 IPR000644 -
Lan12g1287 493 SMART cbs_1 176 225 IPR000644 -
Lan12g1287 493 SMART cbs_1 361 409 IPR000644 -
Lan12g1287 493 SMART cbs_1 443 492 IPR000644 -
Lan12g1287 493 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Lan12g1287 493 ProSiteProfiles CBS domain profile. 357 414 IPR000644 -
Lan12g1287 493 Gene3D - 341 493 IPR046342 -
Lan12g1287 493 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 493 - -
Lan12g1287 493 ProSiteProfiles CBS domain profile. 170 230 IPR000644 -
Lan12g1287 493 SUPERFAMILY E set domains 21 102 IPR014756 -
Lan12g1287 493 SUPERFAMILY CBS-domain pair 358 492 IPR046342 -
Lan12g1287 493 Gene3D - 148 333 IPR046342 -
Lan12g1287 493 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 493 - -
Lan12g1287 493 SUPERFAMILY CBS-domain pair 157 330 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1287 Lan-Chr12 18646357 18653778 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1287 - - gmx:100781819 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1287 12 18646357 18653778 Lan12g1287 12 18646357 18653778 ECH
Lan12g1287 12 18646357 18653778 Lan16g1181 16 19275126 19287799 PCT
Lan12g1287 12 18646357 18653778 Lan19g0553 19 9087288 9099427 PCT
Lan16g1181 16 19275126 19287799 Lan12g1287 12 18646357 18653778 PCT
Lan19g0553 19 9087288 9099427 Lan12g1287 12 18646357 18653778 PCT