Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1264 ATGAAGGAAATGGAAGCTAACATTAAGCATAAATTGGTCTTGTTTTGTGTATTTTATCTTGCTTTGTTCACTACCCTTAAAGCTAATGAAGATCACTTAGACCAAGTTTGGCATAGGCGAGCTTTGGAAGCAAGAAAAGCTGCTCAACAAGCTTTCAGGCCAAACCCTGAAGAAGTTGTTACTGAGTTCAATAAGCACGTTAACAAGGCTATGAATGGCTCTCATGGCTTAAGGAGGGGTTTAAAAGCCAAATACAATGGTCCATGCTTGGCTACAAATCCCATTGATCGTTGCTGGAGATGTGATCCAAATTGGGAAAAAAACCGTAAAAGGCTAGCTGATTGTGTTCTTGGTTTTGCTCATGGCACCACTGGAGGCAAAGATGGCAAAATTTATGTGGTTACTGATTCATCTGATAATGATCTTGTCACACCTAAACCAGGGACATTGAGACATGCTGTTATTCAAACAGAGCCACTATGGATTATTTTTAAACAAAGTATGACCATTAAACTAAGTTCAGAGCTTCTAGTAACTGATAATAAGACCATAGATGCACGTGGTGCACATGTTCATATTGCTAATGGTGCCCAAATCACGTTGCAATATGTGAAAAATATTATCATTCATGGCCTCCACATACATGATATAAAGAAAGGTGGTGGTGGACTCATCAGAGACTCGTTGGACCATTATGGATATCGTTCGCAGAGCGATGGTGATGGAATGTCATTGTTTGGTGTTAGTCATGTTTGGTTAGATCATCTTTCTTTGTCAAATTGTGATGATGGTCTCATTGATGTAGTTGCTGCATCAACTGCTGTTACAATCTCAAACTGTCATATGGCCCGACAAAACGATGTTATGTTATTGGGTGCAAGTGATAGCTTTTCAGGTGATCAAGTGATGCAAGTAACTGTGGCTTTCAACCATTTTGGGAAAGGATTGGTGCAGAGGATGCCAAGATGCAGATGGGGTTATGTTCATATTGTCAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGTTCACATCCTACAATACTCAGTCAAGGAAATCGATTTATTGCTCCTCTCAACCCATTTGCAAAACAGGTGACAAAGAGGGACTATGCATCTGAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGAATGATTTGATGATGAATGGAGCATTCTTTGTTGAATCAGGAAAAAGTGTTGCAACTCCTGCAAACATAGACATCACTGCAAAGCCTGGGACATTTGCAGCAAGTCTCACACGCTTTACAGGTCCTCTAAAATGTGTTGCTAACAAGCCATGCTGA 1320 0.4023 MKEMEANIKHKLVLFCVFYLALFTTLKANEDHLDQVWHRRALEARKAAQQAFRPNPEEVVTEFNKHVNKAMNGSHGLRRGLKAKYNGPCLATNPIDRCWRCDPNWEKNRKRLADCVLGFAHGTTGGKDGKIYVVTDSSDNDLVTPKPGTLRHAVIQTEPLWIIFKQSMTIKLSSELLVTDNKTIDARGAHVHIANGAQITLQYVKNIIIHGLHIHDIKKGGGGLIRDSLDHYGYRSQSDGDGMSLFGVSHVWLDHLSLSNCDDGLIDVVAASTAVTISNCHMARQNDVMLLGASDSFSGDQVMQVTVAFNHFGKGLVQRMPRCRWGYVHIVNNDYTHWLMYAIGGSSHPTILSQGNRFIAPLNPFAKQVTKRDYASESEWKNWNWRSENDLMMNGAFFVESGKSVATPANIDITAKPGTFAASLTRFTGPLKCVANKPC* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1264 439 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Lan12g1264 439 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Lan12g1264 439 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Lan12g1264 439 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Lan12g1264 439 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Lan12g1264 439 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Lan12g1264 439 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Lan12g1264 439 Pfam Pectate lyase 175 358 IPR002022 -
Lan12g1264 439 PANTHER PECTATE LYASE 18-RELATED 10 439 IPR045032 GO:0030570
Lan12g1264 439 SMART amb_all 167 364 IPR002022 -
Lan12g1264 439 PANTHER PECTATE LYASE 10 439 - -
Lan12g1264 439 SUPERFAMILY Pectin lyase-like 93 410 IPR011050 -
Lan12g1264 439 Pfam Pectate lyase, N terminus 32 81 IPR007524 GO:0030570
Lan12g1264 439 Gene3D - 92 432 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1264 Lan-Chr12 18528333 18530489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1264 12 439 Polysaccharide Lyase AT5G15110 52.473 3.22e-179 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1264 K01728 - gmx:100801864 685.641