Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1261 ATGGGGAAGTCACCAGGAAAATGGATCAAAAATGTACTGTTTGGAAAAAAGTCATCCAAATCAAATGTTACAAAAGGAAGAGAGAAACTTGTTAACCAAAAAGAAGGAGAGGTTCCTTCCACGTTGTCAGAAACTGGTTTGGCTTTAGATCCGACCCCAAATATTAATGCCAGAAATGAGGAAGACCCACAACTACAGGATAAAGAAGCAGAAAATGTTTTACCTGGAAGTCAAGAAATAGACACAGTAGAATCTGTTCAACAAGATGCTCCACTTGATCCAGAGAAAATAAGGCTGGGGGAAGCAGCAACAAAGGCACAGGCTGCATTCAGGGGTTACTTGGCTCGACGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACCTGGTAAGGAGACAAGCTGTCACCACATTATGCTCTATGTATGGGATTGTCAAGTTACAAGCACTTGTTCGTGGAAGAAGAGTAAGACTGTCTGAAGTTGGATTTGAAATCCATGAGAAGTGCAATCTATTGAAACCTCTGGATGGCAAACATGTAATGCCAAATGATACATCTACAAAAATTATGAAGCTGTCAGCAAATGCTTTCATCCATAAGCTTCTTGCTTCATCTATTATAATAATGCCCCTGCATTTGCAATATGTTCCTGGTGATCCAAATTCAGTCCTGAGTTGGTTGGAGCGCTGGTCAACATCTCACTTTTGGAAACCAGTTACACAACCCAAGAAAATTCGAGACATTAAGTCTCAGAGAAAGCAAGATAATATTTCAATTGGAGAAGCTCAAGTGAGCAAGTCGAAACGTACGAACCGGAAGTTTCCTACTTCAAATTTTGAGTCGGTTCCAGTGCAACCAAATCCTGAATTTGAGAAACCAAAACGGAACTTTCGGAAAATTTCAAGCCAATCCTCAGATCCTCTGCAGGAAAATCCACAAATTGAGCTTGAAAAGATTAAGCGAAACTTGAGAAAGGTTCACAGCCCAGTTGTTGAGAATAATGTCCCGCCAGAAGTCGAGTCTGAGACCTCAAAGCAGCATTTAGAAAAGGCAATGGCTAACTCCGTTCATGTCGGTGTTTCAGAACAAGAAGGGATTATAAGTTCCAATGAGAAGATCAAGAAAGAAGCAGCATTAACCATTTCCAGTGTTCCTGATGTAGAAGTCCCTCCTACACTTTCGGTGAGTAAGGAGGTATCTGACACTCCTAGCAGTTATCAAGTAGCTGTTGAATCAAATCCCTTGACAGAGATTACAAGTAAAGATGAAAATATTTTTGATAATGAAGTAAAGAATGAGCCAAATGATGCACCAGAGACTGTTTATAAAGATATAAGTTCTCACTTAACAAATGGAGATTTGAGTCACAAGGAAGATCCAACTGGCAGTGAAAACCTGAAACCAACCCGAAAAGCCTCACTTGTAGTAAAGCAGGAACGTGCAGAAAATGGTTCACAGAATAGTCCAAAATTACCGAGTTATATGGCAGCAACTGAATCTGCAAAGGCAAAGTTAAGGGCACAAGGATCTCCAAGACTTGGACAAGAGGGAAGCGAAAGAAACAACCCTGCACGGCGACAATCTCTGCCATCTTCAACTAACAGCAAAATTAGCTCTCATTCACCTAGGACACAAAGGCCAGTTGAAGTTGGTGGCAAAGGGGTGCATAAAAGTGATAAAACTGTATCATCTTCTAGAGAAGGGAATGGTAAGGTAGTTCAAGCAGAATGGAAGAGGTGA 1761 0.4117 MGKSPGKWIKNVLFGKKSSKSNVTKGREKLVNQKEGEVPSTLSETGLALDPTPNINARNEEDPQLQDKEAENVLPGSQEIDTVESVQQDAPLDPEKIRLGEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVTTLCSMYGIVKLQALVRGRRVRLSEVGFEIHEKCNLLKPLDGKHVMPNDTSTKIMKLSANAFIHKLLASSIIIMPLHLQYVPGDPNSVLSWLERWSTSHFWKPVTQPKKIRDIKSQRKQDNISIGEAQVSKSKRTNRKFPTSNFESVPVQPNPEFEKPKRNFRKISSQSSDPLQENPQIELEKIKRNLRKVHSPVVENNVPPEVESETSKQHLEKAMANSVHVGVSEQEGIISSNEKIKKEAALTISSVPDVEVPPTLSVSKEVSDTPSSYQVAVESNPLTEITSKDENIFDNEVKNEPNDAPETVYKDISSHLTNGDLSHKEDPTGSENLKPTRKASLVVKQERAENGSQNSPKLPSYMAATESAKAKLRAQGSPRLGQEGSERNNPARRQSLPSSTNSKISSHSPRTQRPVEVGGKGVHKSDKTVSSSREGNGKVVQAEWKR* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1261 586 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Lan12g1261 586 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Lan12g1261 586 MobiDBLite consensus disorder prediction 262 291 - -
Lan12g1261 586 PANTHER IQ-DOMAIN 5-RELATED 1 573 - -
Lan12g1261 586 MobiDBLite consensus disorder prediction 36 60 - -
Lan12g1261 586 ProSiteProfiles IQ motif profile. 123 150 IPR000048 GO:0005515
Lan12g1261 586 ProSiteProfiles IQ motif profile. 101 127 IPR000048 GO:0005515
Lan12g1261 586 MobiDBLite consensus disorder prediction 557 571 - -
Lan12g1261 586 MobiDBLite consensus disorder prediction 521 552 - -
Lan12g1261 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 164 IPR027417 -
Lan12g1261 586 SMART iq_5 121 142 IPR000048 GO:0005515
Lan12g1261 586 SMART iq_5 98 120 IPR000048 GO:0005515
Lan12g1261 586 MobiDBLite consensus disorder prediction 486 501 - -
Lan12g1261 586 PANTHER PROTEIN IQ-DOMAIN 31 1 573 - -
Lan12g1261 586 MobiDBLite consensus disorder prediction 19 66 - -
Lan12g1261 586 Gene3D - 95 145 - -
Lan12g1261 586 Pfam Protein of unknown function (DUF4005) 486 565 IPR025064 -
Lan12g1261 586 MobiDBLite consensus disorder prediction 457 472 - -
Lan12g1261 586 MobiDBLite consensus disorder prediction 456 586 - -
Lan12g1261 586 MobiDBLite consensus disorder prediction 253 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1261 Lan-Chr12 18507804 18514086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1261 1 586 IQD Protein Family AT1G74690 45.827 1.74e-129 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1261 - - gmx:100794636 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1261 12 18507804 18514086 Lan1g1029 1 20608869 20613837 LSH