Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1260 ATGTCTAGCAGAAGGTCAAGATCTTCAAGTAATATCAGCGAGGATCAGATCAATGACCTTGTCTCAAAGTTACAACAGCTTCTTCCTGAGATTCGCAATAGCCAAAGGCGCTCTGATAAGGTATCATCTGCGAAGATATTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGAGAGGTGGACGATCTAAGTGAGCGTTTGTCTGAGTTGTTGGCAACAACTGATACTGCTCAAGCTGCAATCATTAGAAATCTACTTCTGCAATAA 270 0.4111 MSSRRSRSSSNISEDQINDLVSKLQQLLPEIRNSQRRSDKVSSAKILQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLLQ* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1260 89 Gene3D - 5 85 IPR036638 GO:0046983
Lan12g1260 89 PANTHER TRANSCRIPTION FACTOR PRE 1 87 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lan12g1260 89 CDD bHLH_AtPRE_like 12 74 - -
Lan12g1260 89 PANTHER TRANSCRIPTION FACTOR PRE3 1 87 - -
Lan12g1260 89 Coils Coil 54 74 - -
Lan12g1260 89 Pfam Helix-loop-helix DNA-binding domain 15 58 IPR011598 GO:0046983
Lan12g1260 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 75 IPR036638 GO:0046983
Lan12g1260 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 57 IPR011598 GO:0046983
Lan12g1260 89 SMART finulus 11 63 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1260 Lan-Chr12 18504484 18505680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1260 12 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 80.769 1.65e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan12g1260 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1260 - - twl:119981517 140.969