Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1256 ATGGGTTCAGAGAGTGCTGCTACTATGGTTGAAAAATCAAAAAACAGGTCTTCTCCTTGTAAAAAGAACCAAGGGAAAGTGCCCAAGAGAATTCACAAGGCTGAAAGAGAGAAAATGAAGCGCGAGCATTTGAATGAACGCTTTCTCGATCTTGCTAATGCACTTTACCTAAACGAGCAGAACAATGGAAAGGCTTCTATATTGTGTGAAGCTGCTAGACTAATAAAGGATTTGGTCTGTCAGATTGAGTCCCTCAAAAAGGAGAATGTTTCTCTGTTGTCTGAATCTTATTATGTGGACATGGAGAAAAATGAGCTGAAGGAGGAGAGTTCTGTTCTAGAAGCTCAAATTGAGAAGCTTCATGGTGAGATACAAGCAAAGGTGGCTCAGTCTAAACCTGACCTGAATGCACCTCCTAGTTTGGAACTTGAGCTGCAAGCACAGACAAATTATCCTCACCAGAGTCTCCAATTGCCATCCATAGAACCTACCTTGCCGCAAGGACCTGCCGTATTGGTCGTCCCCTTTCGTCCTGATCTTCAAGCTGTGTTTTCAGCTCCTAATGTTGCTGAGCTCGCACCAAAGCCTGCATCTGTTGTTAGCAAACCACATGCAAGGTATCCTACACCAGCAGATTCATGGCCATTGCAGCTGCTGCTTGGAGAGCAACCTACTTCAAGTTAA 684 0.4415 MGSESAATMVEKSKNRSSPCKKNQGKVPKRIHKAEREKMKREHLNERFLDLANALYLNEQNNGKASILCEAARLIKDLVCQIESLKKENVSLLSESYYVDMEKNELKEESSVLEAQIEKLHGEIQAKVAQSKPDLNAPPSLELELQAQTNYPHQSLQLPSIEPTLPQGPAVLVVPFRPDLQAVFSAPNVAELAPKPASVVSKPHARYPTPADSWPLQLLLGEQPTSS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1256 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 92 IPR036638 GO:0046983
Lan12g1256 227 Coils Coil 75 95 - -
Lan12g1256 227 MobiDBLite consensus disorder prediction 195 227 - -
Lan12g1256 227 PANTHER TRANSCRIPTION FACTOR BHLH47 5 224 - -
Lan12g1256 227 MobiDBLite consensus disorder prediction 1 38 - -
Lan12g1256 227 PANTHER TRANSCRIPTION FACTOR BHLH47 5 224 - -
Lan12g1256 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Lan12g1256 227 Coils Coil 103 123 - -
Lan12g1256 227 Gene3D - 25 103 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1256 Lan-Chr12 18486114 18488483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1256 20 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 51.339 1.02e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1256 - - mtr:MTR_4g108360 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1256 12 18486114 18488483 Lan1g0086 1 665408 667769 LSH