Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1255 ATGGAAGAAGATGATGCTCTCCACCACCACTATCAACAACACCGTCAAAACTTCCCATTCCAACTCCTTGAGAAAAAGGAAGATCAAGAAGCAGCATCATGTTCCACCTCATCACCATACCCAACCCTAGCAATCTCACCAACAGAACCAAGAACTTCCAATTCAAACCGATCCAACCAACTTGATGCAACTACACCCACCAACGCTTCCATAGAACCCTCTAAGAAACCACTGCCAAAGAGAGCCTCCACCAAGGACCGCCACACGAAGGTGGACGGCCGCGGCCGCCGCATCCGAATGCCGGCTCTCTGCGCTGCGCGTGTATTCCAACTCACGCGCGAGCTCGGCCACAAGTCAGATGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCGGAACCATCCGTCATCGCCGCTACCGGAACGGGAACCATCCCCGCTAACTTCACATCACTAAACATCTCTCTCAGAAGCTCAGGGTCCACTATGTCGGTGCCGTCACAACTAAGATCCTCGTACTTCAACCCAAACTTCTCAGTTCAACAACAACGCAGGACCTTGTTTCCCGGAATAGGATTATCATCCGATAACAACAACACGTCAACGCTACTGAATTTCCAACAACCCAATAACCTAGCCATGTTGCAAGCAAAGCAAGAACTTCGAGACAGTGTTGGCGGTGGTGGTCAATCTTCTTCAACCACGCTTGATTTGTCTGATACAAACACAGTTGAAGGTTTAGGAAGAAAAAGAAGACCTACTGAGCAAGACCTTTCGTCAACGCAGCATCAAATGGGGGGTTACCTGCTTCAGTCAAGTGCAGGTGCCATTCCAGCTAGTCACTCTCATACTCCGGCGAATATATGGATGGTGGCGCAGGCTGCAGCAGCCGCGAATTCAAACAATCAGGTTATGAGTCATGGAGACCCTATATGGACTTTTCCACAAGTTAATAACAGTGCTGCTTTGTATAGAGGTACTGTTCCTAGTGGCTTGCATTTTATGAACTATCCTACACCGATGACCTTGTTGCCAGGACAGCAACAAGTAGGTTTATCTGGTGGTGGTAGCAGTGGTAATATAAATATGAATGAAGGGCATTTGAGTATCTTTGCAGGAGTTAGTCCTTATCGGCCGGTGACCGGCGTTTCAGAGTCTCAGGCAAGTGGGTCTCAATCTCAGCACGGTGGCAGTGATGATCGCCATGATTCCACAAGTCATCACTCTTAA 1227 0.4914 MEEDDALHHHYQQHRQNFPFQLLEKKEDQEAASCSTSSPYPTLAISPTEPRTSNSNRSNQLDATTPTNASIEPSKKPLPKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSVQQQRRTLFPGIGLSSDNNNTSTLLNFQQPNNLAMLQAKQELRDSVGGGGQSSSTTLDLSDTNTVEGLGRKRRPTEQDLSSTQHQMGGYLLQSSAGAIPASHSHTPANIWMVAQAAAAANSNNQVMSHGDPIWTFPQVNNSAALYRGTVPSGLHFMNYPTPMTLLPGQQQVGLSGGGSSGNINMNEGHLSIFAGVSPYRPVTGVSESQASGSQSQHGGSDDRHDSTSHHS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1255 408 ProSiteProfiles TCP domain profile. 84 138 IPR017887 -
Lan12g1255 408 MobiDBLite consensus disorder prediction 380 408 - -
Lan12g1255 408 Pfam TCP family transcription factor 83 219 IPR017887 -
Lan12g1255 408 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 9 407 - -
Lan12g1255 408 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 407 IPR005333 GO:0003700
Lan12g1255 408 MobiDBLite consensus disorder prediction 221 261 - -
Lan12g1255 408 MobiDBLite consensus disorder prediction 32 72 - -
Lan12g1255 408 MobiDBLite consensus disorder prediction 1 97 - -
Lan12g1255 408 MobiDBLite consensus disorder prediction 380 394 - -
Lan12g1255 408 MobiDBLite consensus disorder prediction 224 241 - -
Lan12g1255 408 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1255 Lan-Chr12 18480616 18482324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1255 65 349 TCP Transcription Factor Family AT3G47620 45.507 4.71e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan12g1255 TCP 3.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1255 - - cam:101512124 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1255 12 18480616 18482324 Lan1g1034 1 20636638 20638290 LSH
Lan12g1255 12 18480616 18482324 Lan1g0087 1 674200 676474 LSH