Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1250 ATGGGAAGACCCCCTTACTGTCAAAATATTGGGATTAAGAAAGGACCTTGGACTCCAGAGGAGGACATTACTTTGGTCTCTTACATTCAAGAACATGGTCCTGGCAATTGGAGATCTGTTCCAACCAATACAGGTTTGATGAGATGTAGTAAAAGCTGTAGGCTTAGATGGACTAATTATCTTCGACCAGGTATCAAACGAGGTAACTTCACTGATCATGAGGACAAGATGATAATCCACCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCTATAGCTTCTTATCTTCCACAGAGGACAGACAATGACATAAAAAATTACTGGAATACCCATTTGAGGAAGAATCACAACAAGCTTCAAAATGAAGGAAATGATAATCAAGAAGGGTATTCTTCTTCTTCTGCACAAGCACAGTCAAAGGGTCAATGGGAGAGAAGGTTACAAACTGATATTCAAATGGCTAAACAAGCCTTATCTGAGGCTTTGTCCTTTCACAAACCAACAACCAATACTTTCCCTGAAACCAAACCCTCAAGTTTTCATATTCACACTACTACTACTTTAACCTACCCCACAAAACAACCAAACAATGCATCTTCCTATGCATCAAGCTATGAAAACATATCTAAATTGCTAAAAAACTGGATGATGAAATCACCAAACACACCAAATTCCTTTAGCAACAACATGGTCACCACAGGATCGAGTTCGAGCGAAGGAGGAAATAGCAGTACTGATCAATGTACACAAGATCATGGTTTTGACTCCTTAATGAGCTTCAACTCCTCCAAATTTGTTGTTGAAGAGATCAAAAACACCTTGACAACTAATAAGACAGGTGTGTTCCAAGAGCAAGGGAAGACAAACATGGAGACTCAACAAGTGCCTCTTACTTTGCTAGAGAATTGGCTTTTTGATGATGGAGCTGTTCAATGCCATGATGATCTAATGAACATGTCGCTCGAAGAAAGTGCTTTAGGTTTGTTCTAG 990 0.397 MGRPPYCQNIGIKKGPWTPEEDITLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEDKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKNHNKLQNEGNDNQEGYSSSSAQAQSKGQWERRLQTDIQMAKQALSEALSFHKPTTNTFPETKPSSFHIHTTTTLTYPTKQPNNASSYASSYENISKLLKNWMMKSPNTPNSFSNNMVTTGSSSSEGGNSSTDQCTQDHGFDSLMSFNSSKFVVEEIKNTLTTNKTGVFQEQGKTNMETQQVPLTLLENWLFDDGAVQCHDDLMNMSLEESALGLF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1250 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lan12g1250 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan12g1250 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan12g1250 329 CDD SANT 69 112 IPR001005 -
Lan12g1250 329 MobiDBLite consensus disorder prediction 223 250 - -
Lan12g1250 329 Gene3D - 13 66 - -
Lan12g1250 329 CDD SANT 16 61 IPR001005 -
Lan12g1250 329 MobiDBLite consensus disorder prediction 117 146 - -
Lan12g1250 329 Gene3D - 68 144 - -
Lan12g1250 329 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 315 - -
Lan12g1250 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 315 - -
Lan12g1250 329 SMART sant 13 63 IPR001005 -
Lan12g1250 329 SMART sant 66 114 IPR001005 -
Lan12g1250 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan12g1250 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lan12g1250 329 MobiDBLite consensus disorder prediction 122 146 - -
Lan12g1250 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan12g1250 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1250 Lan-Chr12 18448037 18449631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1250 1 321 MYB Transcription Factor Family AT5G62470 50.959 6.73e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan12g1250 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1250 K09422 - gmx:100794319 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1250 12 18448037 18449631 Lan1g1036 1 20649927 20651930 LSH