Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1248 ATGGAGTCTAAACCTACTATGATTTGGGAATCTAACTACGAAATAGATGAAAACCCATTTCCAATTACGTATCAATTCAAGACATATGATTACCACATGAGCGGAAACGTTAATGGGTACCCTGCACTGGATAACTGGCCACAAGAAATTCCGGAATTGCAAGATAGCTATATTGATCCTGTCACTTTCATGGAGTCTTTTTACTCTACAAATCCTTTATATGAAACTCCGACTATTGAACCAATATCAAGTGTACAACTACAAGATTACGATTTTTATGATACTACAAACGGGTTTTCTGTCTGGAATGAAATTGATGCTGAATTTGAAGAAAGTGGGAAGGAAATGATGGAAGATGAGAAGTTTGGAAAGGGTAAGAGGGTTAGAGAAGATATAAGTGTCAGCACCATGATGTTATCAAGGGAAACCATATCTCAGTACTTCTACATGCCAATAACACAAGCTGCAAGAGAACTCAACGTAGGGCTTACACTTTTGAAGAAAAGGTGCAGGGAATTAGGAATTAGAAGGTGGCCTCATAGAAAGTTGATGAGCCTTCAAACTCTTATAAATAATGTGCAGGAACTTGGAAGGAATGGCGAAGAAGAAAGTGAAATGAAGTTAAGGAATGCGATTGAGATGTTGGAAAGGGAAAAGAAGATGTTAGAAGAGATTCCTGATATGCAACTTGGTGATACTACAAAAAGGCTTAGACAAGCATGTTTTAAAGCCACATACAAAAAGAGAATGCTCATGGGAATGATGCAATCACAGTCTTCTACTCCTTATCCCACTTCTCCAAAATATTTTGACACAATTTAG 822 0.3747 MESKPTMIWESNYEIDENPFPITYQFKTYDYHMSGNVNGYPALDNWPQEIPELQDSYIDPVTFMESFYSTNPLYETPTIEPISSVQLQDYDFYDTTNGFSVWNEIDAEFEESGKEMMEDEKFGKGKRVREDISVSTMMLSRETISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGRNGEEESEMKLRNAIEMLEREKKMLEEIPDMQLGDTTKRLRQACFKATYKKRMLMGMMQSQSSTPYPTSPKYFDTI* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1248 273 Pfam RWP-RK domain 139 186 IPR003035 -
Lan12g1248 273 ProSiteProfiles RWP-RK domain profile. 120 206 IPR003035 -
Lan12g1248 273 PANTHER PROTEIN RKD4 57 260 IPR044607 GO:0003700
Lan12g1248 273 PANTHER PROTEIN RKD1-RELATED 57 260 - -
Lan12g1248 273 Coils Coil 198 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1248 Lan-Chr12 18430086 18431215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1248 52 262 AtRKD Transcription Factor Family AT1G18790 50.467 1.07e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan12g1248 RWP-RK 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1248 - - gmx:100788666 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1248 12 18430086 18431215 Lan1g1037 1 20660213 20661940 LSH
Lan12g1248 12 18430086 18431215 Lan1g0091 1 711007 712424 LSH