Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1245 ATGCATCTCTTCCCTCTTTTCTTCTCTCACACCCTTCTTCCTCTCTCATTATTCCCTCATCAATCAAACATCTTCACTCTCTCAACAAGGATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCACAAGTAACCGGCAAGTTACTTATTCCAAACGCAAAAGTGGAATTCTAAAGAAAGCTAAGGAATTATCAATATTATGTGATATACCTATTGCACTTCTCATGTTTTCACCAACCGGAAAACCTACATTGCTTCAAGGAGAGCGCAGCAATGTTGAGGAGGTGATTACAAAGTTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAACTGGAAAGCCTTGAAGTTCTGAAGAAAACCTTCAAGAAGTTGGACCATGATGTAAAAATACAAGACTTTCTGGGTTCAAGCAATCAAACAATGGAGGAATTAACTCATCAAGTGAGGGTTCTACAAACTCAGCTTGCAGAAGTACATCAAAGACTGAGCTATTGGAGTAATCTTGACAAGATCAATAACTTGGAACATCTTAGGCAAATGGAAGACTCACTAAGGGAATCCATGAATCGAGTGTGTCTACAGAAGGAAAATTTAGGAAAGAACCAACTACTTCCACTTGCATGTTCTAACCAGTTACAGGAAGGGATGAATTTACCCATGATGATGGCTGGTTTGCAAGAATCCCAACCCCTGTCTTGGCTTTTGAATAATGATAATCATCACCAGTTGATATTACCCAATGAACCAAAATTTCTAGCATTTAGTGACAATACCAATAGAGATGCTGAGTGCTCCACTGACATTTCACTCCCTGGCTATTCCGGTTATAATATTGGCAACAACAAACTTGAGGTTGGAAACTCTCCCCAAGTCACTACTTTGGGTCATGGAGGTGGTGCTTTGAATGAGTTAAATGGAACTGCTTCCTTAAATGTACAACATTGTGAGCAGTTTGCATACCCTCCTCATCCACCAGATGATGAGGAAATGAAACAACACCAAGGAATGAATAGTAAACCAAACACTGCAGATTACCAAATTCATAACAACTTTGATTTGCCTAGATCACTCTTTGAAAATGGACATCAGTTCTGGAATTCTGGCCCTGGGCCTTGTGGAATTGCTATGTATAATGAGAATGGCTTCCATAGATAA 1164 0.3952 MHLFPLFFSHTLLPLSLFPHQSNIFTLSTRMGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIPIALLMFSPTGKPTLLQGERSNVEEVITKFAQLSPQERAKRKLESLEVLKKTFKKLDHDVKIQDFLGSSNQTMEELTHQVRVLQTQLAEVHQRLSYWSNLDKINNLEHLRQMEDSLRESMNRVCLQKENLGKNQLLPLACSNQLQEGMNLPMMMAGLQESQPLSWLLNNDNHHQLILPNEPKFLAFSDNTNRDAECSTDISLPGYSGYNIGNNKLEVGNSPQVTTLGHGGGALNELNGTASLNVQHCEQFAYPPHPPDDEEMKQHQGMNSKPNTADYQIHNNFDLPRSLFENGHQFWNSGPGPCGIAMYNENGFHR* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1245 387 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Lan12g1245 387 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Lan12g1245 387 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Lan12g1245 387 SUPERFAMILY SRF-like 32 125 IPR036879 GO:0003677|GO:0046983
Lan12g1245 387 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 85 IPR002100 GO:0003677|GO:0046983
Lan12g1245 387 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 31 386 - -
Lan12g1245 387 Coils Coil 144 164 - -
Lan12g1245 387 ProSiteProfiles MADS-box domain profile. 31 83 IPR002100 GO:0003677|GO:0046983
Lan12g1245 387 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Lan12g1245 387 Gene3D - 44 126 IPR036879 GO:0003677|GO:0046983
Lan12g1245 387 PANTHER SERUM RESPONSE FACTOR HOMOLOG 31 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1245 Lan-Chr12 18413018 18416761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1245 31 337 Type I MADS-box Gene Family AT2G03060 45.988 4.08e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan12g1245 SRF-TF 6.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1245 - - lang:109362237 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1245 12 18413018 18416761 Lan1g0098 1 737961 742365 LSH